Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1129 ATGGATGGTGCGTCAAAATTCCATGGAATGATAGACCTGAACAAGCATAATAACTATTATGATGTCTCTGAAGGTTTTTATCGTAAGCTTGGAGAGGGTACTAATATGTCACTTGAAAGCATTGGGAGCTTGCAAACAGGTAATGATGGAGGATCTGTCGCGATGTCTGTTGATAATAGCAGTGTTGGGTCCAATGATTCCCATACCCGCATGTTGGATCACCAAGGATTGAAGAGGCGTGCCAATGATAACTACTCTGTTGCACACAGTGTCAATCATCGAGGAGGAGTCATACATGCTTTAAGTGATGATGCTTTGGCTCGAGCTCTTATGGACAGTAGTTCTCCAACTGAGGGTCTTGACAATTTTCATGAGTGGACAATTGATTTGAGGATGCTTAATATGGGTGAGGCTTTTGCGCAAGGTGCTTTTGGGAAACTCTATAGGGGTACTTACAATAATGAAGATGTTGCTATCAAAATCTTGGAGAGGCCAGAAAATGATCCACCAAAGGCTCAACTGATGGAACAGCAGTTCCAGGCCGAGGTCATGATGCTGGCTACGCTAAAGCATCCTAACATAGTCCGTTTCATCGGTGCATGCCGTAAGCCAATGGTATGGTGCATTGTAACTGAGTATGCCAAAGGTGGTTCAGTTCGACAGTTTTTAAGGAAGCGTCAAAACCGATCAGTACCTCTCAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGGGGAATGGCATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAATCTATTAAAATTGCAGACTTTGGAGTTGCCCGGATTGAAGTGCAAACTGAAGGAATGACACCGGAAACTGGAACTTACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCCTACACTCAAAAGGTGGATATATATAGCTTTGGGATTGTTCTATGGGAACTCATCACTGGAATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAGAAACGTTCGTCCAATTGTACCCAATGATTGCTTGCCCATTCTCCGTGAGATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGACCACCCTTTGCTGAAATTGTAGGAATGCTAGAGAGCGCTGAGACTGAGATCATGACAACAGTGCGGAAGGCTCGTTTCAGGTGTTGCATCGCCCAACCAATGACTGCTGACTGA 1245 0.445 MDGASKFHGMIDLNKHNNYYDVSEGFYRKLGEGTNMSLESIGSLQTGNDGGSVAMSVDNSSVGSNDSHTRMLDHQGLKRRANDNYSVAHSVNHRGGVIHALSDDALARALMDSSSPTEGLDNFHEWTIDLRMLNMGEAFAQGAFGKLYRGTYNNEDVAIKILERPENDPPKAQLMEQQFQAEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLRKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDIYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPIVPNDCLPILREIMTRCWDPNPDVRPPFAEIVGMLESAETEIMTTVRKARFRCCIAQPMTAD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1129 414 Gene3D Transferase(Phosphotransferase) domain 1 216 409 - -
Lal16g1129 414 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 5 405 - -
Lal16g1129 414 CDD STKc_MAP3K-like 140 387 - -
Lal16g1129 414 SUPERFAMILY Protein kinase-like (PK-like) 118 387 IPR011009 -
Lal16g1129 414 PANTHER SERINE-THREONINE PROTEIN KINASE 5 405 - -
Lal16g1129 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Lal16g1129 414 ProSiteProfiles Protein kinase domain profile. 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1129 414 SMART serkin_6 133 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1129 414 Pfam Protein tyrosine and serine/threonine kinase 134 386 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Lal16g1129 414 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1129 Lal-Chr16 7666369 7673214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1129 23 414 MAP Kinase Kinase Kinase AT2G24360 78.571 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal16g1129 PK_Tyr_Ser-Thr 8.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1129 - - gmx:100788536 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1129 16 7666369 7673214 Lal23g0534 23 8140334 8144335 LSH