Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1127 ATGGGGAATTGCGTTAGCATTGATGAACCTAACACAAATGCTAGCACTACTACAAAACCTAAGACTTCAGCTAGTTCTGTAGGATATGAATCTTCGTCTGTATCAACAACCACTGCAACTTCGATGAATATCAAAGATCTTCGAGAAAATGCTGGATACAGCAATGTTGATATTTTCACTTATGACGAACTCAGGCTCGCTACCAAGCACTTTCGCCCCGACTTCATCTTAGGAGAAGGTGGTTTTGGAGTTGTGTATAAAGGAGTTGTAGATGATAGTGTTAGGTCAGGTTACAAGTCCATTCAAGTCGCAATTAAAGAGCTTAATCGCGAAGGTTTTCAAGGCGATAGGGAATGGCTTACTGAAGTTAACTATTTAGGTCAATTTAGTCACCCAAATCTTGTGAAGCTCATCGGATATTGCTGTGAGGATGATCACAGGTTATTGGTTTATGAATACATGGCAAATGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACCCTGACATGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGACTTGCTTTTCTCCATGGCGCTGAAAGACCCATCATATATCGGGACTTCAAGACATCAAATATCTTGCTAGATGTGGATTTCAATGCAAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGACCGATGGGAGACCAAACCCATGTTTCAACACGAGTAATGGGCACATACGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGCGATGTGTATGGTTTTGGTGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGACCCAGCCGAGAGCACAACTTGGTCGAGTGGGCACGCCCGTTATTGAATAATAAAAAGGTAGTGGGGATTTTAGATCCTAAAATGGATGGGCAATATTCCTATAGAACTGCAATAAGGGTGGCTCATCTAGCATACCAATGCCTTAGCCAAAACCCAAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAATTTCTTGAAAATCATCAGCCAAAGGGGGAACTTGAAGAAGATCAATTGCTTCGAAGCGGAAGTAGCAGCGTAACCATTTATGAAGTTCCAAAGGGCGGCGATGACACAACAAATGAAGGGAAAAAACAAAACTAA 1170 0.4239 MGNCVSIDEPNTNASTTTKPKTSASSVGYESSSVSTTTATSMNIKDLRENAGYSNVDIFTYDELRLATKHFRPDFILGEGGFGVVYKGVVDDSVRSGYKSIQVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMANGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDVDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNNKKVVGILDPKMDGQYSYRTAIRVAHLAYQCLSQNPKGRPLMSQVVEFLENHQPKGELEEDQLLRSGSSSVTIYEVPKGGDDTTNEGKKQN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1127 389 SUPERFAMILY Protein kinase-like (PK-like) 54 355 IPR011009 -
Lal16g1127 389 PANTHER OS01G0588500 PROTEIN-RELATED 21 387 - -
Lal16g1127 389 MobiDBLite consensus disorder prediction 1 32 - -
Lal16g1127 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lal16g1127 389 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Lal16g1127 389 CDD STKc_IRAK 77 349 - -
Lal16g1127 389 Gene3D Transferase(Phosphotransferase) domain 1 154 368 - -
Lal16g1127 389 Gene3D Phosphorylase Kinase; domain 1 45 153 - -
Lal16g1127 389 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1127 389 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 21 387 - -
Lal16g1127 389 MobiDBLite consensus disorder prediction 355 389 - -
Lal16g1127 389 Pfam Protein tyrosine and serine/threonine kinase 77 347 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1127 Lal-Chr16 7637541 7643514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1127 59 347 Glycoside Hydrolase AT3G07070 51.195 3.35e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal16g1127 PK_Tyr_Ser-Thr 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1127 - - lang:109349878 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1127 16 7637541 7643514 Lal16g1127 16 7637541 7643514 ECH
Lal16g1127 16 7637541 7643514 Lal23g0535 23 8157357 8163568 LSH