Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1125 ATGGCACTGATCATAATCAGTGTCTTTGATGATAATAATAATAATATTAGACCATTTTGTATCAAAACATTCTTTCTTCTTTTATGTGTTGTTGTTGGTTCTTATGGTGCTACAGACTCAGAGCTGCTCCTAAAGTTTAAGGACAAATTACAAAACAATAGTGCATTATCCTCATGGAATTCATCAACTGTTCCTTGTAATTCAGATCATGGTGATAATAATTGGGCTGGTGTTATTTGCAATGGAGGGAAAATATGGGGGTTGCAACTTGAGAATATGGGTCTAAAGGGTGTCATTGATGTGGAATCTCTTAAGGAGTTACCATTTCTTAGAACCTTAAGTTTCATGAATAATGATCTTAATGGTACAATGCCAGAGATTAACAAGCTAGTTGGTTTGAAGGCAATTTACCTTTCAAGCAACAAGTTCTCTGGGGAGATTCTTGCTCAAACTTTTGAAAGCATGCAATGGTTGAAGAAAATTCATTTGTCAAATAATCAGTTTAGTGGTGCTATTCCAAATTCATTGACAAATTTATCAAGGCTTATGGAGTTAAAGTTAGATGGAAACAAATTCAGTGGCCATATTCCTCCTTTTCGACAGAACACATTGAAATTATTTACTGTAGCTAATAATCAGTTGCAAGGAGATATACCTGCTACACTTAGTAAGTTCCAGGAGTCTGCATTTTCTGGTAATGAAGGGTTATGTGGAGCTCCATTGGGTGCATGCATTACTGTTGTTCATTATCCCAAGAAGCCCTCAACTATAAGCACTATTGTGGTTGCAGTAGTTGTTGGTTTAGCAGTAATATGTGTGATGGGAGCAATAATATTCATCCTTCTCCGGAAAATAAAATCAAAAAATTCCTTAGAGAATGAACCTTCAGCCCTTAACAAAAAGGGTGTGAAAGAAGCAGGTGATGAGAGTCACAGGTCATCAAGCTCAACCCAAAGCAGAAGAGGGGATAATAACATGAAGTTATGTTTCATAAAGGATGATGGAGAAAGATTTGATTTGCATGAGTTGCTTAGAGCCTCTGCTGAGATTTTAGGAAGTGGTTGTTTCACTTCTTCTTATAAGGCTTCTTTGGTGAGTGGAGGAAAGATAGTAGTGAAGAGGTTCAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCATGAGCATATGAGAAGGATTGGAAGGTTGAATCATCCTAACTTGCTTCCCCTTGTTGCATACTATTATAGAAAAGAAGAGAAGCTTTTGGTTTCTCACTATGTTCAGAATGGTAGCCTTGCTGTTAGACTTCATGGTAAAATTAAGTATCAAAAGGGTTGGGTAGGATCCTCTCCAGTATTGGAGAGGAAAGTGCATGAGAAAACAACGAAAAAATGGTATGGACACCAAGCTCTAGGAGAACCAAGCCTTGATTGGGCAACCCGGTTGAAGATTGTAAAAGGCATAGCAACAGGTCTTGAATATCTATACAAAGACATGCCAAGCCTAATTGCACCACATGGAAATCTTAAATCATGTAATGTTCTTCTAACACAATCATTTGAGCCACTCCTATGTGACTATGGTTTGGTCCCTGTCATAAACCAAGAGCTAGCTCAGGACATCATGGTCATATACAAATCTCCTGAGTACTTACAACATGGCAGGATCACAAAGAAAAGTGATGTTTGGTGCCTTGGGATACTAATATTGGAAATCTTAACTGGAAAGTTTCCTTCAAACTTCTTGCAAAAAGGTAAAGGAAGTGAGTTAAGTTTGGCAAATTGGGTCCTTTCAGTTGACCCAGAAGAGTGGACCAATGAAGTGTTTGATAAAGAAATGGGAGGAACAAGGAATAGTGATTACGAAATGGTTCAGCTTTTGAAGGTTGCTTTGGATTGTTGTGAAGGAGATGTGGATAAAAGATTGGATTTGAAAGAAGCAGTGGAGAAAATACTAGATGTTAAGGAAAAGGACCATGATGATGATTTTTATTCATCTTATGCTAGTGAAGCAGATATGAGATCTTCAAGGGGATTATCTGGTGAAATCATTTTCTAA 2040 0.375 MALIIISVFDDNNNNIRPFCIKTFFLLLCVVVGSYGATDSELLLKFKDKLQNNSALSSWNSSTVPCNSDHGDNNWAGVICNGGKIWGLQLENMGLKGVIDVESLKELPFLRTLSFMNNDLNGTMPEINKLVGLKAIYLSSNKFSGEILAQTFESMQWLKKIHLSNNQFSGAIPNSLTNLSRLMELKLDGNKFSGHIPPFRQNTLKLFTVANNQLQGDIPATLSKFQESAFSGNEGLCGAPLGACITVVHYPKKPSTISTIVVAVVVGLAVICVMGAIIFILLRKIKSKNSLENEPSALNKKGVKEAGDESHRSSSSTQSRRGDNNMKLCFIKDDGERFDLHELLRASAEILGSGCFTSSYKASLVSGGKIVVKRFKQMNNVGKEEFHEHMRRIGRLNHPNLLPLVAYYYRKEEKLLVSHYVQNGSLAVRLHGKIKYQKGWVGSSPVLERKVHEKTTKKWYGHQALGEPSLDWATRLKIVKGIATGLEYLYKDMPSLIAPHGNLKSCNVLLTQSFEPLLCDYGLVPVINQELAQDIMVIYKSPEYLQHGRITKKSDVWCLGILILEILTGKFPSNFLQKGKGSELSLANWVLSVDPEEWTNEVFDKEMGGTRNSDYEMVQLLKVALDCCEGDVDKRLDLKEAVEKILDVKEKDHDDDFYSSYASEADMRSSRGLSGEIIF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1125 679 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Lal16g1125 679 MobiDBLite consensus disorder prediction 296 321 - -
Lal16g1125 679 PANTHER LRR RECEPTOR-LIKE KINASE 21 433 - -
Lal16g1125 679 PANTHER LRR RECEPTOR-LIKE KINASE 458 661 - -
Lal16g1125 679 SUPERFAMILY Protein kinase-like (PK-like) 349 645 IPR011009 -
Lal16g1125 679 Gene3D Transferase(Phosphotransferase) domain 1 455 667 - -
Lal16g1125 679 Gene3D Ribonuclease Inhibitor 203 244 IPR032675 -
Lal16g1125 679 Gene3D Ribonuclease Inhibitor 38 202 IPR032675 -
Lal16g1125 679 MobiDBLite consensus disorder prediction 298 316 - -
Lal16g1125 679 SUPERFAMILY L domain-like 68 241 - -
Lal16g1125 679 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Lal16g1125 679 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Lal16g1125 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 458 661 - -
Lal16g1125 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 433 - -
Lal16g1125 679 Pfam Protein tyrosine and serine/threonine kinase 349 644 IPR001245 GO:0004672|GO:0006468
Lal16g1125 679 ProSiteProfiles Protein kinase domain profile. 345 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1125 Lal-Chr16 7617680 7628929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1125 26 678 Receptor kinase-like Gene Family AT5G35390 51.173 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal16g1125 PK_Tyr_Ser-Thr 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1125 - - gmx:100804368 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1125 16 7617680 7628929 Lal16g1125 16 7617680 7628929 ECH
Lal16g1125 16 7617680 7628929 Lal15g1046 15 8644398 8662842 LSH
Lal16g1125 16 7617680 7628929 Lal23g0539 23 8200414 8206994 LSH