Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1121 ATGGAGAGAGGAAATGGAACAGAGTGTAAGCAATTTCCATCTCATGGCGGAAAAAGCTTATTCACAGTTGCTGCTATTAGGAAGAAACATTTACAGAAAGAGATGAACGTTGTTAATGTAACTTCTTCATCTTATGTAAAGAGTAAAAAACGTAACCGTTTTCAGGAAGAGTTATTAACAGAAGATTACATTGCGAACAACATTTTCCGTAAAGATGGTCCTGTTCTTGGTCACGATTTTGACTTTCTTCCTTCTGGGCCCAAAGTTTATGCTCCTGCTTGTCCAGAGAACCTAATAAACACCAAAAGGAAGAAGGTTCTCTTCCCTCAGGTTTACAAGAGTGCAATTGTGAGTCATCCTGACTGTAATATGGAAGTACCTGTGAAGAAACATGGTGTTGGCAAGGGTTTGATGACAGTTTGGATGGCAACAAATCCTGATGGTAGGGACCTTCCAATTGGATATGGTTTGGTCGACCAGGAAGTTCGTCTAGCCTCAAATTCTATTCTACATAAACCAGTCTGTGATAACAAGAGGTCTCGGAAAACAGTAACCATGAATGGAATGCTAAAAAATAAATTGCAGAGTAAGAGAAATAAATTACAGGATAAGAGGCATTTTGACATTCAAAGAAGACCGGGGGAATCTAACCAATATGTGAGTGAGATCCAGCTACCAAAAGAAAAATGCGATCTTGCTTTGAATAGTGCAATATCTGCAGAGAGACTTGATCGAGTTTCGATGCTAATCGATGATGAAGAGCTAGAGATGAGAGATTTAGAAGCTGGGACTGACCTGCTTATGTGTTCTGATCATCTTGCTACCAGTGGAATACTTGGCTGCTCACTTTGTAAAGATGTGCTAGTTAAATTCCCCCCAGATACTGTCAAGATGAAGAAACCTATCTGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTTCATTTCCTATATACATATGCTATAGTTGTTGATACATGCCTCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGTACTCAATGTTACTTGGGAAGATTCATGTGGCCCTTCTTACAGTTCTTCTATCTGACATTGAAATGGAGCTTACTAATGGGTTTTCACCTCATTTAAATAAGTCATGCAACTTTCTTGCTCTGGTTCACTCGGTCGAAAGTCAAGAATATTCCTTGAATTTCTGGAGAAAATCTCTTAATCCTCTTACTTGGATCGAAATACTCCGTCAAGTGCTAGTTGCTTCTGGATTTGGTTCAAAGCAAGGTGCTTTACGGAGGGAGACCCTTAGCAAGGAACTGAATCTTTTTGTAAACTATGGTCTACGTCCTGCAACCTTGAAGGGTGAGTTGTTTAAAATCTTGTTAGAGCGAGGAAACAGTGGATGCAAGGTATCCGAGCTAGCAAAGTCAATGCAGATTGCAGAATTAAACCTTGTCAGAACAACAGAGGAGCTGGAGTCCTTAATATGCTCGACACTTTCTAGTGACATTACTTTATTTGAAAAGATCTCATCATCAGCATATCGGTTGCGAATGAGCACTGTTACAAAGGAGAATGATGAATTGGAGTCAGATATGGAGGACTCTGGGAGTGTTGATGATGAACTCAATGACAGTGATACATGTAGCAGTGGTGATGATTTTGAAAGTGATTTAAGAATGACCAATGTAAGAAAACTGAAGCGCACAAACAGTCACAAAATTAAAAACAATATGCTGAAAGTGTATACTGAAATTGATGAGAGCCATCCAGGGGAAGTTTGGTTGTTAGGACTTATGGAAAGTGAGTATTCAGATTTGAACATTGAAGAAAAGTTGAATGCATTGGTGGCTCTAACTGATCTCCTTTCATCTGGGTCCAGCATCAGGATGAAGGATACAATGAAAATTACAGCTGATCGCAGTTCTAGCATCCAATTATGTGGTTCAGGAGCAAAAATAAAGAGATCAGTAATAAAGAACCCCAGGCCAGTTTGGAACCAGACTGCACAAATGCAATGTGCTAAAGAAGCACATTCTATTTTTCATCCTGATCCAGTAGATTCCTCATCATTAATCTCTAATGTCCATAATCATGAGGGTTCCTCTGAGAAGGGAATAGATTCAACTGGTTCACACCCAATTCAATCAGTGTTTTTGGGATCTGATCGTAGGTACAATAGATACTGGCTTTTTTTGGGCCCTTGTAATGCAGATGATCCTGGCCATAGGAGGGTTTACTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCCTTGTGTGCCTTGGTATCAGTTCTAGATGATAGGGGGAAACGGGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACACACATCTTTATGCAGATCTATGTCTAGGATTAAGGTTAATATTACTGGAATGAGGTGTGTGTCACATTCTGATCAGTCTGAGCTGGATATGGTCACAGAAGACAGTTACTCTCCTATATCTGATGTAGACAATCTGAACATGACTGAGACTGCTGAAGACTCTTTGCCTTCAGCTGGGGCTGTGGTTATTGCAGCTGGAAAGAAGGGAGAGGAAAAAGTGCAAAAATGGCTCTGCATGCAAGAATATGATTCTTGGATTTGGAGTTCCTTTTATTTAGATCTAAATGTTGTAAAATATGGTAGAAGGTCGTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCACGATCTATACTGGAGAGACGAGAGACACTGCAAAATTTGCCATTTGACATTTGAACTTGATTTTGATCTAGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGAGAAAGAAGACAGCAATATATTTCCAAATCATAAAGTATTGTCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCCGTTATGCCTGAAGATGCCCTTGTGGGTGCTTGGAGGAAGTCTGCTCATAATTTATGGGTCAAACGACTCAGACGCACCTCAACTTTAGTGGAGCTTTTTCAGGTTCTTACTGATTTTGTTGACGCCATCAATGAGGACTGGTTGTTTCAATGCCACTTTCCTGATGGTGTGGTTGAAGAAATCATTTCATCTTTTGCATCTATGCCTCATACATCGTCTGCCCTTGCCCTGTGGTTAGTGAAGTTAGATATCATAATTGCTCCCTACCTGAACCGACTTCAGCATCAGAAGAAGCAGGGAATCAGTAAGCATGGAATTTGCTGA 3237 0.401 MERGNGTECKQFPSHGGKSLFTVAAIRKKHLQKEMNVVNVTSSSYVKSKKRNRFQEELLTEDYIANNIFRKDGPVLGHDFDFLPSGPKVYAPACPENLINTKRKKVLFPQVYKSAIVSHPDCNMEVPVKKHGVGKGLMTVWMATNPDGRDLPIGYGLVDQEVRLASNSILHKPVCDNKRSRKTVTMNGMLKNKLQSKRNKLQDKRHFDIQRRPGESNQYVSEIQLPKEKCDLALNSAISAERLDRVSMLIDDEELEMRDLEAGTDLLMCSDHLATSGILGCSLCKDVLVKFPPDTVKMKKPICLQPWDSSPEIVKKLFKVFHFLYTYAIVVDTCLFTLDEFVQAFHDKYSMLLGKIHVALLTVLLSDIEMELTNGFSPHLNKSCNFLALVHSVESQEYSLNFWRKSLNPLTWIEILRQVLVASGFGSKQGALRRETLSKELNLFVNYGLRPATLKGELFKILLERGNSGCKVSELAKSMQIAELNLVRTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVTKENDELESDMEDSGSVDDELNDSDTCSSGDDFESDLRMTNVRKLKRTNSHKIKNNMLKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLLSSGSSIRMKDTMKITADRSSSIQLCGSGAKIKRSVIKNPRPVWNQTAQMQCAKEAHSIFHPDPVDSSSLISNVHNHEGSSEKGIDSTGSHPIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALVSVLDDRGKREALLIESLERRHTSLCRSMSRIKVNITGMRCVSHSDQSELDMVTEDSYSPISDVDNLNMTETAEDSLPSAGAVVIAAGKKGEEKVQKWLCMQEYDSWIWSSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHLTFELDFDLEERYAIHTATCREKEDSNIFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWVKRLRRTSTLVELFQVLTDFVDAINEDWLFQCHFPDGVVEEIISSFASMPHTSSALALWLVKLDIIIAPYLNRLQHQKKQGISKHGIC 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1121 1078 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 592 631 IPR028942 -
Lal16g1121 1078 MobiDBLite consensus disorder prediction 529 553 - -
Lal16g1121 1078 PANTHER OS07G0619600 PROTEIN 43 1070 - -
Lal16g1121 1078 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 717 790 IPR028941 -
Lal16g1121 1078 ProSiteProfiles DDT domain profile. 311 370 IPR018501 -
Lal16g1121 1078 SMART testlast3 311 370 IPR018501 -
Lal16g1121 1078 Pfam DDT domain 314 367 IPR018501 -
Lal16g1121 1078 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 43 1070 IPR044977 GO:0006357
Lal16g1121 1078 MobiDBLite consensus disorder prediction 526 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1121 Lal-Chr16 7577581 7588797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1121 232 1057 Homeobox Transcription Factor Family AT1G28420 26.619 9.96e-71 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lal16g1121 WSD 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1121 - - aprc:113853612 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1121 16 7577581 7588797 Lal23g0543 23 8263920 8278964 LSH