Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal16g1120 | ATGTTTCTATCACTTTCCACAATTCATTCAACTTCTTTTCTTCCTTTATCACCAACCACCACTTCATTTTCCATCAACCTCCGCCGCCGCCGTTACGTCGCCACCGCCAAAGCCGCCGTCAGCGACTTTGATAACACTCCGCCACAGCCTCTGCTTCAAGTCAACGACCTCAAAGCTAAGATCGTTGAAAACGGTGTTGACATTCTTCACGGCGTTAACCTCACCATTAACCATGGTGAAGTTCACGCCATCATGGGAAAGAACGGTTCCGGAAAAAGCACTTTTGCTAAGGTTCTTGTTGGGCATCCGGACTATGAAGTCACCGGAGGCAGTGTCGTGTTTAAAGGTGAGAATTTGCTTGACATGGAACCTGAGGAAAGATCCCTTGCTGGTCTTTTTATGAGCTTCCAATCTCCTGTTGCGATTCCCGGTGTTTCGAATGATGAGTTTCTAGTCATGGCTTATAATGCTCGAAGAAGAAAGCTTGGCCTCCCTGAGCTTGGTCCACTAGAGTGCTTTTCGTACCTGATGGAGAAACTAAAACTTGTTAATATGAAGCCTGACTTTCTGAATAGAAATGTTAATGAAGGATTTAGTGGTGGTGAACGCAAACGCAATGAGATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTAGACGAAATTGATTCTGGGTTGGATGTTGATGCACTTAGAGATGTAGCAAATGCAGTCAACCAGATTCTGACCCCAAAGAATTCTCTGTTGATGATAACTCATTATCGACGACTTCTCGATCTCTTAAATCCCACACATGTCCATATTATGGACAAAGGGAAAATTGCAAGGACAGGCGACAAATCACTGGTAGCAGTTATTGAGGATGAGGGATATGAACCCGTCTCCGCTTTAACTTAG | 903 | 0.4485 | MFLSLSTIHSTSFLPLSPTTTSFSINLRRRRYVATAKAAVSDFDNTPPQPLLQVNDLKAKIVENGVDILHGVNLTINHGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVAIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRLLDLLNPTHVHIMDKGKIARTGDKSLVAVIEDEGYEPVSALT | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal16g1120 | 300 | ProSitePatterns | ABC transporters family signature. | 198 | 212 | IPR017871 | GO:0005524 | |
Lal16g1120 | 300 | TIGRFAM | sufC: FeS assembly ATPase SufC | 52 | 294 | IPR010230 | GO:0005524 | |
Lal16g1120 | 300 | SMART | AAA_5 | 78 | 275 | IPR003593 | - | |
Lal16g1120 | 300 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 50 | 282 | IPR027417 | - | |
Lal16g1120 | 300 | Gene3D | - | 51 | 297 | IPR027417 | - | |
Lal16g1120 | 300 | PANTHER | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC | 46 | 297 | IPR010230 | GO:0005524 | |
Lal16g1120 | 300 | Pfam | ABC transporter | 69 | 223 | IPR003439 | GO:0005524 | |
Lal16g1120 | 300 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 52 | 298 | IPR003439 | GO:0005524 | |
Lal16g1120 | 300 | CDD | ABC_FeS_Assembly | 52 | 293 | IPR010230 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal16g1120 | Lal-Chr16 | 7572837 | 7577273 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal16g1120 | 66 | 283 | Calmodulin-binding Proteins | AT2G36910 | 24.242 | 9.33e-09 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal16g1120 | K09013 | - | gmx:100798005 | 435.261 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal16g1120 | 16 | 7572837 | 7577273 | Lal23g0544 | 23 | 8279412 | 8284104 | LSH |