Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1120 ATGTTTCTATCACTTTCCACAATTCATTCAACTTCTTTTCTTCCTTTATCACCAACCACCACTTCATTTTCCATCAACCTCCGCCGCCGCCGTTACGTCGCCACCGCCAAAGCCGCCGTCAGCGACTTTGATAACACTCCGCCACAGCCTCTGCTTCAAGTCAACGACCTCAAAGCTAAGATCGTTGAAAACGGTGTTGACATTCTTCACGGCGTTAACCTCACCATTAACCATGGTGAAGTTCACGCCATCATGGGAAAGAACGGTTCCGGAAAAAGCACTTTTGCTAAGGTTCTTGTTGGGCATCCGGACTATGAAGTCACCGGAGGCAGTGTCGTGTTTAAAGGTGAGAATTTGCTTGACATGGAACCTGAGGAAAGATCCCTTGCTGGTCTTTTTATGAGCTTCCAATCTCCTGTTGCGATTCCCGGTGTTTCGAATGATGAGTTTCTAGTCATGGCTTATAATGCTCGAAGAAGAAAGCTTGGCCTCCCTGAGCTTGGTCCACTAGAGTGCTTTTCGTACCTGATGGAGAAACTAAAACTTGTTAATATGAAGCCTGACTTTCTGAATAGAAATGTTAATGAAGGATTTAGTGGTGGTGAACGCAAACGCAATGAGATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTAGACGAAATTGATTCTGGGTTGGATGTTGATGCACTTAGAGATGTAGCAAATGCAGTCAACCAGATTCTGACCCCAAAGAATTCTCTGTTGATGATAACTCATTATCGACGACTTCTCGATCTCTTAAATCCCACACATGTCCATATTATGGACAAAGGGAAAATTGCAAGGACAGGCGACAAATCACTGGTAGCAGTTATTGAGGATGAGGGATATGAACCCGTCTCCGCTTTAACTTAG 903 0.4485 MFLSLSTIHSTSFLPLSPTTTSFSINLRRRRYVATAKAAVSDFDNTPPQPLLQVNDLKAKIVENGVDILHGVNLTINHGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVAIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRLLDLLNPTHVHIMDKGKIARTGDKSLVAVIEDEGYEPVSALT 300
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1120 300 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524
Lal16g1120 300 TIGRFAM sufC: FeS assembly ATPase SufC 52 294 IPR010230 GO:0005524
Lal16g1120 300 SMART AAA_5 78 275 IPR003593 -
Lal16g1120 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 282 IPR027417 -
Lal16g1120 300 Gene3D - 51 297 IPR027417 -
Lal16g1120 300 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 46 297 IPR010230 GO:0005524
Lal16g1120 300 Pfam ABC transporter 69 223 IPR003439 GO:0005524
Lal16g1120 300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 298 IPR003439 GO:0005524
Lal16g1120 300 CDD ABC_FeS_Assembly 52 293 IPR010230 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal16g1120 Lal-Chr16 7572837 7577273 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1120 66 283 Calmodulin-binding Proteins AT2G36910 24.242 9.33e-09 54.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1120 K09013 - gmx:100798005 435.261
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1120 16 7572837 7577273 Lal23g0544 23 8279412 8284104 LSH