Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1103 ATGGTTGACACCAAGGGTAGAAAGGAAGAGGTTGTTACCAGAGAGTACACCATCAACCTCCACAAACGCTTACATGGCTGCACATTCAAAAAGAAGGCTCCCAAAGCAATCAAGGAGATAAGGAAGTTTGCCCAGAAATCCATGGGGACAAACGATGTGAGAGTGGATGTGAAGCTGAACAAGTATGTGTGGAGCCAGGGGATCCGAAGTGTCCCAAGGAGGATCCGGGTACGCATTGCACGCAAGAGAAATGACGATGAAGATGCAAAGGAAGAGCTCTACTCCCTTGTTACAGTGGTTGAAATCCCCAAGGATGAGCTCAAGGGTTTGGGCACAAAGGTTATTGATGATGAGGATTGA 360 0.475 MVDTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKSMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKDELKGLGTKVIDDED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1103 119 Gene3D - 8 119 IPR023621 -
Lal16g1103 119 SUPERFAMILY Ribosomal protein L31e 10 91 IPR023621 -
Lal16g1103 119 Pfam Ribosomal protein L31e 10 91 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal16g1103 119 SMART Ribosomal_L31e_2 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal16g1103 119 PANTHER 60S RIBOSOMAL PROTEIN L31 3 119 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal16g1103 119 CDD Ribosomal_L31e 8 91 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal16g1103 119 PANTHER 60S RIBOSOMAL PROTEIN L31-2-RELATED 3 119 - -
Lal16g1103 119 ProSitePatterns Ribosomal protein L31e signature. 53 67 IPR020052 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1103 Lal-Chr16 7458433 7461164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1103 1 119 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 79.832 2.68e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1103 K02910 - gmx:100810835 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1103 16 7458433 7461164 Lal16g1103 16 7458433 7461164 ECH
Lal16g1103 16 7458433 7461164 Lal23g0560 23 8471837 8474158 LSH