Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1100 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTGAAAAGAGGACCATGGTCTCCTGAAGAAGATGCAACCCTAAAAAACTACCTTAAGAATCATGGCACTGGTGGTAATTGGATAACCCTTCCACAAAAAGCAGGCCTTAAGCGTTGTGGGAAGAGTTGTCGTCTTAGGTGGCTGAACTATCTGAGGCCACATATCAAGCATGGAGGTTTCACTGATGAGGAAGATAGAGTTATCTGCACCCTTTATGCTACCATTGGAAGTAGGCAATATACACTTATTCAAAAATACATTAAAGAAATAAGGTGGTCTCTAATAGCAGCCCAACTACATGGAAGAACAGACAATGATGTGAAAAACCATTGGAACACAAAGTTAAAGAAAAAGTTTTTGGCAGAAAATACTAATATTGCAACTAACAACACTAGTCACATGATCAACAACATTGATTGTTCACAGTTCTCAACTTTCACTTCTCAGCCTCAAGTTGAAGCCTTTTTATTTGATCATAAGAACTCACCTTGTTATGACCCCTATGTTTTTGGTTTGGACCAAACACCATTTCCAGTTCCTTTATCAATGCCTTTGGAATTGGATGTTTCAGGTTATGAAACCAGCATGAGTAACAGTTGTGGAATTATACCATTTTCTAAGGAAGAGAATGATAATAATAATACACAATGGCTTGGATATGAAGATGCTGGTGCTGCCATGTTGCTTGATTTTGTGTATGAAGATTTCTTGCCTAACAATGGGTTTGCTTCTCAAGACAAAAGCACCAAAATTGCTTCACCATCTAGCTAA 804 0.3831 MGRAPCCDKANVKRGPWSPEEDATLKNYLKNHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDRVICTLYATIGSRQYTLIQKYIKEIRWSLIAAQLHGRTDNDVKNHWNTKLKKKFLAENTNIATNNTSHMINNIDCSQFSTFTSQPQVEAFLFDHKNSPCYDPYVFGLDQTPFPVPLSMPLELDVSGYETSMSNSCGIIPFSKEENDNNNTQWLGYEDAGAAMLLDFVYEDFLPNNGFASQDKSTKIASPSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1100 267 PANTHER TRANSCRIPTION FACTOR RAX3 1 206 - -
Lal16g1100 267 PANTHER OS09G0431300 PROTEIN 1 206 - -
Lal16g1100 267 Gene3D - 70 129 - -
Lal16g1100 267 CDD SANT 16 62 IPR001005 -
Lal16g1100 267 CDD SANT 71 126 IPR001005 -
Lal16g1100 267 Gene3D - 7 68 - -
Lal16g1100 267 SUPERFAMILY Homeodomain-like 48 135 IPR009057 -
Lal16g1100 267 ProSiteProfiles Myb-like domain profile. 63 126 IPR001005 -
Lal16g1100 267 SMART sant 67 128 IPR001005 -
Lal16g1100 267 SMART sant 13 64 IPR001005 -
Lal16g1100 267 Pfam Myb-like DNA-binding domain 69 124 IPR001005 -
Lal16g1100 267 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal16g1100 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lal16g1100 267 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal16g1100 267 SUPERFAMILY Homeodomain-like 9 66 IPR009057 -
Lal16g1100 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1100 Lal-Chr16 7447199 7448982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1100 1 131 MYB Transcription Factor Family AT5G65790 73.282 1.68e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g1100 Myb_DNA-binding 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1100 K09422 - gmx:778160 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1100 16 7447199 7448982 Lal16g1100 16 7447199 7448982 ECH