Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1099 ATGATGCTTGGTGAAGAATCTCACCCAACGGTGCACGTGCCTCACGTGCCACCTTGGCCTTTCTTTGACGACGATATCTTTTCTTCTCTTTCCGTTAACGGCGACGTTAATGCCGTTAACAACGCCGCTGATTACTCTCCGTGCTACTTGCATGAAGCGCTTTCGGCTCTGCAGCGTTACCTTCCCTTCAACGACGACGGCGACGGTGACTCGGAGTTGGATTCTCCGGTTGATGCGTTTTCCGGTGACTATTTCAGAATGTTCGAGTTCAAGGTTCGGAGGTGTGCACGTGTAAGGTCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAGAAGGCACGCCGCCGTGACCCGAGGAAGTTTCATTACTCCGGCACGGCATGCCCTGATTTTCGCAAAGGAGGATGCAAGAAGGGCGATGCATGTGAGTTCGCGCACGGCGTTTTCGAGTGCTGGCTACACCCGGCACGTTACCGGACTCAGCCGTGCAAGGACGGTGTCAATTGCCGGAGGAGGGTTTGTTTCTTCGCTCACATGCCGGAGCAACTTAGGGTTCTGCCTCAGCAGAGTCCCCGTAGTGCCGATTCATACGACGGTTCACCTCTCCGTACAAAAACACTGCAACTTATCCCCTCAACGGAGTCTATATCCCCGCCGGCTCTTAATTCACCTTCAGAGTCTCCTACGTTGATGGTAGCGTCGCTTCGAAACTTGCAACTTGATAAGATGAAGTCATTACCATCATCTTGGAGCATTCCAATTGGTTCTCCTCGGTTCGGATCTCCGAGTGGACCTGTGATTCGGCCTGGATTCTGTAGCTTGCCGTCTACTCCAACGACGCAGCCTCCGGTTCGGACCGGGTTTAACTGTTTTGAAGTATGGGACAGTAGTTGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTTGAATCTGGAAGAGACATAAGGGCCAAGATGTTTGAGAAGTTAAGCAAAGAGAATTCTCTCGGTAAATCCGATTAA 1005 0.5234 MMLGEESHPTVHVPHVPPWPFFDDDIFSSLSVNGDVNAVNNAADYSPCYLHEALSALQRYLPFNDDGDGDSELDSPVDAFSGDYFRMFEFKVRRCARVRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGGCKKGDACEFAHGVFECWLHPARYRTQPCKDGVNCRRRVCFFAHMPEQLRVLPQQSPRSADSYDGSPLRTKTLQLIPSTESISPPALNSPSESPTLMVASLRNLQLDKMKSLPSSWSIPIGSPRFGSPSGPVIRPGFCSLPSTPTTQPPVRTGFNCFEVWDSSCCEEEPVMERVESGRDIRAKMFEKLSKENSLGKSD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1099 334 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Lal16g1099 334 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Lal16g1099 334 Gene3D - 125 188 - -
Lal16g1099 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Lal16g1099 334 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Lal16g1099 334 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 333 - -
Lal16g1099 334 PANTHER UNKEMPT FAMILY MEMBER 7 333 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1099 Lal-Chr16 7437938 7438942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1099 80 255 C2H2 Transcription Factor Family AT5G12850 49.010 3.33e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal16g1099 zf-CCCH 6.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1099 - - aprc:113867365 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1099 16 7437938 7438942 Lal16g1099 16 7437938 7438942 ECH
Lal16g1099 16 7437938 7438942 Lal23g0566 23 8530395 8531465 LSH