Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1096 ATGAATATGATCAGCAACTTGAGCTGTGTTAGCAGCTCCAATCTCATAGATACCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAACAGTGCCCAGGTTGTGGACACAAGTTTCAAGGAAAACCGGACTGGCTAGGTCTACCTGCAGGAGTAAAGTTTGATCCTACAGACCAAGAACTCATAGAACATCTTGAAGCTAAAGTTGTGGCAAAAAACATGAAGTCACACCCTTTGATAGATGTTTTCATTCCTACTATTGAAGGAGATGATGGCATTTGTTACACTCATCCTGAGAAACTTCCAGGAATAACAAGAGATGGGTTGAGCAGACACTTTTTCCATAGACCATCAAAGGCTTATACAACAGGGACAAGAAAGAGAAGAAAGATTCAAAATGAATGTGAAAACTTGCATGGAGGAGGAGAAACAAGGTGGCACAAGACAGGTAAAACAAGGCCAGTGATGGTTAATGGAAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTTTATACCAATTTTGGGAAGAACAGAAAACCTGAGAAGACAAATTGGGTTATGCATCAATACCATTTAGGAATGCATGAAGAAGAGAAAGAAGGAGAGCTTGTTGTGTCAAAAATATTCTATCAGACACAGCCAAGGCAGTGCAATTGGTCTCATGAGAGAATTGGTGCAACAACAACAACAACAATAGTTGGTGAATTTGGAAGTGGAGAACAACTTAGTTATAACAATGGAAGAAGAGACAGTGGAAGTGGAAGTTGTTCTTCTAAGGAAATAGTTACTTTTAGAGATGACATAATGTCTGATGTTGTTGGTGTCCCTCCAAATTCAAGCTTCAATGATGCTATGGACATTCAACACCTAAAATCTGACAATTTCAGCTTCATCTCCTTCAGAAAAGGCTTCCAAGAGGTTGGAATAGGAGAATCTTCCACAAGAGAATGCAATGAATTACATGATCAACAACAACAAGCAGCTTTCCACATGAACATGCCTTCACATTCCATTTCCACATTAATCTCTCCAACTCCTCTTCACCAAACATCCATCACCCTTGACGACAACTCTTACCATGTCTCTACAATAATGCTACAAAATGAAAATTTCCAGCAACAACAACAACATAAGCTAGGAGGAAGATCTGTGTCCGGATTGGAGGAACTAATTATGGGGTGCACTTCAACTGATACTAGAGAGGAGCCATCCATCACAAACCCACAACTAGAAGCTGAATGGTTGAAGTACTCATCTTACTGGCATGACCCTGACAACCCAAATCATCATGGGTAG 1293 0.4014 MNMISNLSCVSSSNLIDTKLEEHQLCGSKQCPGCGHKFQGKPDWLGLPAGVKFDPTDQELIEHLEAKVVAKNMKSHPLIDVFIPTIEGDDGICYTHPEKLPGITRDGLSRHFFHRPSKAYTTGTRKRRKIQNECENLHGGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGMHEEEKEGELVVSKIFYQTQPRQCNWSHERIGATTTTTIVGEFGSGEQLSYNNGRRDSGSGSCSSKEIVTFRDDIMSDVVGVPPNSSFNDAMDIQHLKSDNFSFISFRKGFQEVGIGESSTRECNELHDQQQQAAFHMNMPSHSISTLISPTPLHQTSITLDDNSYHVSTIMLQNENFQQQQQHKLGGRSVSGLEELIMGCTSTDTREEPSITNPQLEAEWLKYSSYWHDPDNPNHHG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1096 430 Gene3D NAC domain 56 214 IPR036093 GO:0003677|GO:0006355
Lal16g1096 430 ProSiteProfiles NAC domain profile. 47 210 IPR003441 GO:0003677|GO:0006355
Lal16g1096 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 316 406 - -
Lal16g1096 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 301 - -
Lal16g1096 430 Pfam No apical meristem (NAM) protein 48 191 IPR003441 GO:0003677|GO:0006355
Lal16g1096 430 SUPERFAMILY NAC domain 43 210 IPR036093 GO:0003677|GO:0006355
Lal16g1096 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 301 IPR044799 GO:0003700
Lal16g1096 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 316 406 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1096 Lal-Chr16 7391061 7397573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1096 11 420 NAC Transcription Factor Family AT5G56620 54.098 7.13e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal16g1096 NAM 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1096 - - gmx:100795246 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1096 16 7391061 7397573 Lal16g1096 16 7391061 7397573 ECH
Lal16g1096 16 7391061 7397573 Lal23g0572 23 8564239 8570887 LSH
Lal16g1096 16 7391061 7397573 Lal25g0130 25 815121 821641 PCT