Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1094 ATGAACAAGACCTGTACTCTATCTTTTCTCATCCTCCTTCTCTTGCATCATTTGACTGCAGTAAAAGCTGCCATTGGTGTTAGTATTGGCACTGGAGGTGTTGGTGTTGGTGTAGGTGTAGGTATTGGTGTTGGCAATGGTGGCGGTGGCGGTGACAATGGTGTTAACAGCCCTGGGCCTTCAGGATCATCTTCAGTGCCAAAACATGACACTGCTTACACAGCTCTTCAGGCATGGAAATCAGCAATCACTGATGACCCATTGAAGATCTTAGATACTTGGGTTGGTCCTGATGTGTGTTCTTATAAAGGAGTATTTTGTTCAAATAATCCTCAAGATGCAACAACTAGCACTGTTGCAGGAATAGATCTCAACCATGCTAATCTCCAAGGAACTATTGTCAAAGAACTCTCTTTACTATCTGATATGACTCTTCTCCATCTCAACAGTAATAGATTCAGTGGTACACTTCCTGGTACATTCAGAGACCTTCTTTCTCTTGAAGAGTTAGACCTTAGCAATAACCAACTTTCAGGTCCTTTCCCAACAGTTATTTTATACATGCCAAACCTCATTTACTTGGACCTCAGGTTCAACTCCTTCTCAGGAACCCTTCCTGAACAACTCTTCAATAACAATCTTGATGCAATTTTTCTCAACAACAATCAATTTGGTGGTGAAATCCCACAGAGTTTGGGTAACTCACAAGCCTCAGTGATAAACTTAGCAAACAACAAGTTAAGTGGAAACATGCCTATAAGTTTTGGCATCATTGGTTCAAATTCTAAACTTAGGGAGATTCTCTTCCTCAATAACAAGATAACTGGTTGCATTCCTCAAGGCTTAGGGATTTTCACAGATATGCAAGTTCTTGATCTCAGCTTCAACTCACTCATGGGTCATTTGCCAGACACAATATCATGCCTTCAAGACATAGAAGTTCTCAACTTGGCACATAACAAGCTTTCTGGGGAGTTATCTGATGTTATATGTTCTCTGAGAAGCCTAGTGAATCTAACTGTTGCTTATAATTTCTTTTCTGGGTTCAGTCAACAGTGTTCAAGGCTTTTCAATGTTGGATTCGATTTCTCAGATAATTGTATTCCTGGAAGGGACATGCAGAGACCTCAACCAGAATGTTCTGTTATCCCAGGTGGTAGTCTCAGTTGTCTAAGAATCCCAACTCCAAAACCTATTGCTTGTATTTCATTGGCTGCAAGTCTTACTTCTATGCATACAGATCACAGTTCATCATTTCCCTAA 1263 0.4054 MNKTCTLSFLILLLLHHLTAVKAAIGVSIGTGGVGVGVGVGIGVGNGGGGGDNGVNSPGPSGSSSVPKHDTAYTALQAWKSAITDDPLKILDTWVGPDVCSYKGVFCSNNPQDATTSTVAGIDLNHANLQGTIVKELSLLSDMTLLHLNSNRFSGTLPGTFRDLLSLEELDLSNNQLSGPFPTVILYMPNLIYLDLRFNSFSGTLPEQLFNNNLDAIFLNNNQFGGEIPQSLGNSQASVINLANNKLSGNMPISFGIIGSNSKLREILFLNNKITGCIPQGLGIFTDMQVLDLSFNSLMGHLPDTISCLQDIEVLNLAHNKLSGELSDVICSLRSLVNLTVAYNFFSGFSQQCSRLFNVGFDFSDNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPKPIACISLAASLTSMHTDHSSSFP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1094 420 Pfam Leucine rich repeat N-terminal domain 70 108 IPR013210 -
Lal16g1094 420 SUPERFAMILY L domain-like 72 357 - -
Lal16g1094 420 Gene3D Ribonuclease Inhibitor 235 359 IPR032675 -
Lal16g1094 420 Gene3D Ribonuclease Inhibitor 70 234 IPR032675 -
Lal16g1094 420 PANTHER LRR/EXTENSIN 1 418 - -
Lal16g1094 420 Pfam Leucine rich repeat 144 200 IPR001611 GO:0005515
Lal16g1094 420 PRINTS Leucine-rich repeat signature 167 180 - -
Lal16g1094 420 PRINTS Leucine-rich repeat signature 309 322 - -
Lal16g1094 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 418 - -
Lal16g1094 420 SMART LRR_typ_2 188 212 IPR003591 -
Lal16g1094 420 SMART LRR_typ_2 140 163 IPR003591 -
Lal16g1094 420 SMART LRR_typ_2 285 309 IPR003591 -
Lal16g1094 420 SMART LRR_typ_2 164 187 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1094 Lal-Chr16 7372491 7373753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1094 51 392 Leucine-rich Repeat extension Gene Families AT3G24480 47.278 8.06e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1094 - - gmx:100820611 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1094 16 7372491 7373753 Lal16g1094 16 7372491 7373753 ECH