Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1093 ATGGGACGTGGAAGAATACCTATGGAAGTGATTAAGAAGGAGAAAGCTCGGAAGACAACATTTCAGAAGAGAAAGAATGGCCTAATGAAGAAAGTTTATGAGTTTTCAACTCTCTGTGGTGTTGATGTTTGCCTAATTATTTATGCCCCAGACTTTGATGATAAAGGAGATTGTGAATTCGAGACATGGCCACAAGACACAAGAGAGGTACGCCGCATAATTCAGAAGTATAACAACACGACAAGTGATAGGCGTCCGAGGATCTATGATGTGCAAGAGTACTTCAAAGATAGGATGAAAAAAGTTGAAGCTGAGATATCCAAAGTGCACAAAGAGAAGCTGAAGATAATGTACCCAACTTGGGATGAATCTTTCAATGCCTTGGGAGAAGAACAATTGAGGATGTTTGTTAGTAATTTGGATGCTAAGCTTAATGCTTGTAATCAAAGAATCAACATGCTAAAAGGAGATATGGGAAAAGGAAAAATAGCAGAACCAAATAAGGCTGGGTTAGTTACTCCTTACTTGGCTTCAAAGTCAAGTAACCATCTCAACTTCTTGCTGAACATGTCTCAAGGACAGTTTTATCCTTCCCCTATGAAGCCAATTAGTGATAACATTAACAACCAGCTACCCTTTCATCCATTTCAGTTTGGCCAGAATTCTCAAACTAACATGCTTCATTTTGGTCAAAATTGTTTGCAATTGATGGGGCCAAATGGAATGGCTGATTGTGTTGGAGGACAATTTGGTGGAGGTGTTACTTATGATGCCAAAAATGCTATGCTAAGGGATGATGGAGCTGAAAATAATGAAAATATGTCACCATACTATTATAATGGAAATGTACACACAGTGCAGCCATATAACATTATGCAGACTCTTCCTTCTCAGAATTCACAGTATGAAACTGCTTTCCAGACTCTACCAAATCTATCACCTTCTAATGGGTTTGCACCTCATGCATTCTATGATACAAATATGCTTCAAGCAAATATATTGAATGACATGCATGGAAGGAAATAG 1026 0.383 MGRGRIPMEVIKKEKARKTTFQKRKNGLMKKVYEFSTLCGVDVCLIIYAPDFDDKGDCEFETWPQDTREVRRIIQKYNNTTSDRRPRIYDVQEYFKDRMKKVEAEISKVHKEKLKIMYPTWDESFNALGEEQLRMFVSNLDAKLNACNQRINMLKGDMGKGKIAEPNKAGLVTPYLASKSSNHLNFLLNMSQGQFYPSPMKPISDNINNQLPFHPFQFGQNSQTNMLHFGQNCLQLMGPNGMADCVGGQFGGGVTYDAKNAMLRDDGAENNENMSPYYYNGNVHTVQPYNIMQTLPSQNSQYETAFQTLPNLSPSNGFAPHAFYDTNMLQANILNDMHGRK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1093 341 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal16g1093 341 PANTHER MADS BOX PROTEIN 3 241 - -
Lal16g1093 341 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lal16g1093 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal16g1093 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal16g1093 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal16g1093 341 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
Lal16g1093 341 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal16g1093 341 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Lal16g1093 341 PANTHER PROTEIN, PUTATIVE-RELATED 3 241 - -
Lal16g1093 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1093 Lal-Chr16 7370314 7371339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1093 1 254 Type I MADS-box Gene Family AT5G55690 31.274 3.24e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal16g1093 SRF-TF 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1093 - - lang:109350953 641.343