Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1092 ATGTCTTCTCCCGCTGAGTTTTATCACTCTCTTCCACCTATCTGCAAGGCTTATGGCACAGCTTGTTTGGTTGCTACCGCAGCTTATCAAATTGGATTATATAATCCGGTTTACATCGCGCTTGTGTATGAACATGTGTTCTATCGATTTCAGATCTGGAGGCTTTTCACAAACTTCTTTTTCCTCGGACCATTCTCTATCAATTTTGGGATTCGTCTCTTGATGATAGCAAGGTATGGCGTACAACTCGAGAAGGGGCCATTTGACACGCGGACCGCTGATTTCTTGTGGATGATGACATTTGGAGCCTTTGTGCTTCTGGTTTTGTCTGCCATCCCAATTTTTTGGTCCCCGTTTTTGGCAATATCACTTGTTTTTATGCTCGTTTATGTTTGGAGTAGAGAATTTCCAAATGCTCAAATCAACTTATATGGACTTGTTTCACTTAAGGCCTTCTATCTTCCATGGGCGATGTTTGCTTTGGATGTCATTTTTGGTTCACCTCTTATGCCCAATCTGTTGGGTATCATTGCAGGACATCTATACTACTTTTTGACAGTGTTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAGTGTGGATACATAAATTGGTCACACGGTGGAGAATAGGAGCGCCACCACCAGTGAGCCGTGGCCAGCCAACTAATAATGCTCAACAAGATAGAGGCCATCACCTCTCAGCTTCTGCTATCATTGGCCATGATGGTTCCATTTGGGCTCAGAGTTCTTCCTTCCCTCAGTTTAAGGCTCAAGAGGTCAGTGATATAATGAAGGATTTCGATGAACCTGGTCATCTTGCACCTACAGGTTTGCACCTTGCTGGAGCCAAATACATGGTCATTCAGGGAGAATCAGGAGCTGTCATCCGTGGCAAGAAGGGATCTGGAGGTGTTACCATAAAGAAAACGGGTCAGGCTTTAGTTTTTGGTGTGTATGAGGAACCTGTGACTCCAGGACAGTGCAACATGGTTGTTGAGAGATTGGGAGATTACCTCATAGATCAGGGTCTTTAG 1044 0.4435 MSSPAEFYHSLPPICKAYGTACLVATAAYQIGLYNPVYIALVYEHVFYRFQIWRLFTNFFFLGPFSINFGIRLLMIARYGVQLEKGPFDTRTADFLWMMTFGAFVLLVLSAIPIFWSPFLAISLVFMLVYVWSREFPNAQINLYGLVSLKAFYLPWAMFALDVIFGSPLMPNLLGIIAGHLYYFLTVLHPLAGGKNILKTPVWIHKLVTRWRIGAPPPVSRGQPTNNAQQDRGHHLSASAIIGHDGSIWAQSSSFPQFKAQEVSDIMKDFDEPGHLAPTGLHLAGAKYMVIQGESGAVIRGKKGSGGVTIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLIDQGL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1092 347 Pfam Der1-like family 11 202 IPR007599 -
Lal16g1092 347 PRINTS Profilin signature 237 246 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Profilin signature 256 276 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Profilin signature 280 294 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Profilin signature 316 329 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Profilin signature 329 346 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 243 256 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 268 282 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 287 296 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 300 315 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 320 333 IPR005455 GO:0003779
Lal16g1092 347 PRINTS Plant profilin signature 333 346 IPR005455 GO:0003779
Lal16g1092 347 CDD PROF 235 346 IPR005455 GO:0003779
Lal16g1092 347 SUPERFAMILY Profilin (actin-binding protein) 232 346 IPR036140 -
Lal16g1092 347 PANTHER DERLIN-1 1 230 - -
Lal16g1092 347 Gene3D Dynein light chain 2a, cytoplasmic 225 347 - -
Lal16g1092 347 SUPERFAMILY Rhomboid-like 10 186 IPR035952 -
Lal16g1092 347 SMART prof_2 225 347 IPR005455 GO:0003779
Lal16g1092 347 Pfam Profilin 235 346 IPR005455 GO:0003779
Lal16g1092 347 PANTHER DER1-LIKE PROTEIN, DERLIN 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1092 Lal-Chr16 7361713 7368101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1092 232 347 Cytoskeleton Gene Families AT4G29340 83.621 7.80e-70 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1092 K13989 - gmx:100783754 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1092 16 7361713 7368101 Lal16g1092 16 7361713 7368101 ECH
Lal16g1092 16 7361713 7368101 Lal15g1044 15 8631289 8634230 LSH