Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1091 ATGTCGTGGCAAACCTACGTGGATGAACACCTTCTGTGTGATATTGAAGGTAATCAACTTACTTCAGCTGCTATCATTGGCCAAGATGGTAGTGTTTGGGCCCAAAGCTCCAATTTCCCTCAGTTCAAGCCTGAGGAAATAACTGCTATAGTGAATGACTTTGCTGAGCCTGGATCACTTGCTCCAACTGGATTATATCTCGGCGGCACAAAATATATGGTGATCCAAGGTGAACCCGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTTAAGAAGACGAATCAGGCCTTGATCATTGGCATTTATGATGAACCAATGACTCCTGGTCAGTGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTCTGA 396 0.4545 MSWQTYVDEHLLCDIEGNQLTSAAIIGQDGSVWAQSSNFPQFKPEEITAIVNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMVVERLGDYLIDQGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1091 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Lal16g1091 131 PANTHER PROFILIN-2 1 131 - -
Lal16g1091 131 SMART prof_2 1 131 IPR005455 GO:0003779
Lal16g1091 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Lal16g1091 131 CDD PROF 2 130 IPR005455 GO:0003779
Lal16g1091 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lal16g1091 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Lal16g1091 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Lal16g1091 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Lal16g1091 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1091 Lal-Chr16 7352345 7360514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1091 1 131 Cytoskeleton Gene Families AT2G19760 77.863 1.27e-76 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1091 K05759 - zju:107432825 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1091 16 7352345 7360514 Lal25g0309 25 2120547 2121881 ECH
Lal16g1091 16 7352345 7360514 Lal16g1091 16 7352345 7360514 ECH
Lal16g1091 16 7352345 7360514 Lal15g1036 15 8529144 8530924 LSH
Lal16g1091 16 7352345 7360514 Lal23g0578 23 8593369 8596414 LSH