Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1088 ATGTCAAATTTTCATTGCATTTTCTATGTTTTAGTACTTCTTCTCCTTCTCCAAAATCCCATTTCAACACAAAGCCACACAAAGGGAATTAGACCAGGGCGTTCAGAAGGGAATGGAGTAACCACAAACATGACCAAAGTCCAATTTTCAGAACAACAATTCATGAAATGGGTGAAGTTTGTTGGTGGTCTCAAACACACTGTATTTGGGACAGCAAAAAATAAGCTTTTTCCTTCACTCACTTTGCAAGTTTCTAAGAATCCTTCTAAAGGAGATTTTTCTTCAATTCAAGCAGCCATTGATTCCTTACCATTCATCAATCTAGTGAGAGTTGTTATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAATATTCCACCATTGAAATCCTTCATAACCATACAAGGATCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCAGGGCCAAGAGGCCAGCCACTAGGAACCTATGGTTCTGCCACTTTTGCAGTGAATTCACCTTATTTCATTGCAAAAAACATAACATTCAAAAACACTACTCCAGTTCCGGCACCCGGAGCAGTTGGAAAACAAGCAGTGGCATTAAGAATTTCAGCAGATACAGCAGTATTTCATGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATCTTGGTAGGCACTATTACAAGGATTGCTATATTGAAGGATCTGTTGATTTCATATTTGGAAATGCTCTCTCTCTATTTGAGGGATGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCCCAAGGAAGGGGAAGTCTATTAGAGGACACAGGTTTCTCTTTTGTGCACTGTAAGGTCACGGGCTCAGGAGCACTGTACCTTGGAAGGGCTTGGGGACCCTTTTCTAGGGTTGTCTTTGCTTACACTTATATGGACAATATCATTATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTATAAATGCACAGGACCAGGTGCAAAGTTTGCAGGGAGAGTATCATGGTCAAGAGAGCTCACTGATGAGGAAGCTAAACCATTTATTTCAATTAACTATATTGATGGTTCTGAATGGATTAGGGATATTTTTTGA 1149 0.4073 MSNFHCIFYVLVLLLLLQNPISTQSHTKGIRPGRSEGNGVTTNMTKVQFSEQQFMKWVKFVGGLKHTVFGTAKNKLFPSLTLQVSKNPSKGDFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGSGADKTIVQWGDTAQTPGPRGQPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTAVFHGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRGSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGAKFAGRVSWSRELTDEEAKPFISINYIDGSEWIRDIF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1088 382 SUPERFAMILY Pectin lyase-like 78 378 IPR011050 -
Lal16g1088 382 Pfam Pectinesterase 89 374 IPR000070 GO:0030599|GO:0042545
Lal16g1088 382 Gene3D - 79 381 IPR012334 -
Lal16g1088 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 379 - -
Lal16g1088 382 PANTHER PECTINESTERASE 1 379 - -
Lal16g1088 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1088 Lal-Chr16 7323842 7328731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1088 93 378 Carbohydrate Esterase AT5G47500 50.174 3.57e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1088 K01051 - gmx:100802832 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1088 16 7323842 7328731 Lal16g1088 16 7323842 7328731 ECH
Lal16g1088 16 7323842 7328731 Lal23g0581 23 8623299 8629246 LSH