Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1087 ATGGGGAGAGCTACAAGGTGGTTGAAGAACTTGTTTGGTATAAAGAGAGACAAAGAGCACAAGAAAAGTTCAAATTCAAGGGGTTTGTGTCATAATCTACCACCCAACATTTCTTCCTCAGAAGCTGCTTGGCTTCAATCCTTATACTCAGAAACAGAGAAGGAACAGAACAAGCATGCCATTGCTGTAGCTGCAGCCACAGCAGCAGCAGCGGACGCTGCCGTGGCTGCGGCTCAGGCTGCTGTTGCAGTAGTTAGGCTAACAAGTCATGGCAGAGACACCCTTTTTGGTGGTGGATATGAAAAGTTTGCAGCTGTTAAGATTCAAACAGTGTTTAGGGGTTACTTGGCAAGGAAGGCACTGAGAGCCTTGAAAGGTTTGGTGAAGTTACAAGCACTTGTAAGAGGATATCAAGTGAGAAAACAAGCAACAGCAACCCTGCATAGTATGCAGGCTCTTGTTAGAGCTCAAGCAACAGTTCGGTCTCATAAATCTGGTGGACTCATGAACACATTGAATGAATCACATAGGTTTCAATCTCAATCAAGAAGATCCATGGTACAGATCTCAAATTCTATCAAGTCTTCTATAATTTTCATTCTAATATTGGTTGATAGGGAGAGGTTTGATGACATTAGGAGTGAGTACAATGGTAGAAGGTTATCATCTTCATTTGATGCCACAATGAATAACACCACCAACAGTGTTGAAGGAAGCCCAAAAATAGTTGAAGTGGACACTGGCAATGGCAAACCTAAGTCAAGGTCTAGAAGGACTAACACATCAATTTCAGATTTTGGTGATGACCCTTCATTTCATGCACTTCCTTCTCCCCTCCCAATCCCATGTCACAGAAATTTTCATGACTCAGATTGGGTACTAACTGGTGAACAAAGCAAGTTTTCCACAGCACAAAGCACTCCACGCTTCACCAACTCTTGTAGTTTTGGCTCTATTGCATCTATGACACCTAAAAGTGTTTGCACTGATAGCTTCTTCATTGGCCAACATGTCAATTTTGTACCAAATTACATGGCTAGGACTCAGTCTTTCAAGGCCAAGTTGAGGTCTCAGAGTGCTCCAAAGCAAAGGCCAGAGCCAGGTCCAAAAAGGAGACTTTCCTTGAATCAAATGATGGAATCTAGAAGTAGTTTAAGTGGTGTAAGAATGCAAAGGTCTTGCTCACAGATTCAAGAAGCTGTTAATTTTAAGAATGTTGTGATGTGTAAGCTTGAGAAGTCTACAAAAACTGGTAGGGAAACTGATAGAAACTACTTCAACCACTAG 1287 0.4204 MGRATRWLKNLFGIKRDKEHKKSSNSRGLCHNLPPNISSSEAAWLQSLYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRDTLFGGGYEKFAAVKIQTVFRGYLARKALRALKGLVKLQALVRGYQVRKQATATLHSMQALVRAQATVRSHKSGGLMNTLNESHRFQSQSRRSMVQISNSIKSSIIFILILVDRERFDDIRSEYNGRRLSSSFDATMNNTTNSVEGSPKIVEVDTGNGKPKSRSRRTNTSISDFGDDPSFHALPSPLPIPCHRNFHDSDWVLTGEQSKFSTAQSTPRFTNSCSFGSIASMTPKSVCTDSFFIGQHVNFVPNYMARTQSFKAKLRSQSAPKQRPEPGPKRRLSLNQMMESRSSLSGVRMQRSCSQIQEAVNFKNVVMCKLEKSTKTGRETDRNYFNH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1087 428 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Lal16g1087 428 ProSiteProfiles IQ motif profile. 101 129 IPR000048 GO:0005515
Lal16g1087 428 Pfam Protein of unknown function (DUF4005) 307 387 IPR025064 -
Lal16g1087 428 MobiDBLite consensus disorder prediction 231 269 - -
Lal16g1087 428 SMART iq_5 123 144 IPR000048 GO:0005515
Lal16g1087 428 SMART iq_5 100 122 IPR000048 GO:0005515
Lal16g1087 428 MobiDBLite consensus disorder prediction 353 372 - -
Lal16g1087 428 Pfam IQ calmodulin-binding motif 104 122 IPR000048 GO:0005515
Lal16g1087 428 Pfam IQ calmodulin-binding motif 128 142 IPR000048 GO:0005515
Lal16g1087 428 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
Lal16g1087 428 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 415 - -
Lal16g1087 428 Gene3D - 101 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1087 Lal-Chr16 7318254 7321611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1087 1 390 IQD Protein Family AT3G16490 49.750 3.99e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1087 - - var:108346918 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1087 16 7318254 7321611 Lal16g1087 16 7318254 7321611 ECH