Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1079 ATGGAACCCTCAGAGGACAAGCAACACCAACGAGTCGACTCAGAGTTTACCTCTACGAGTTCCGCCTCAGGCATTTCCTCCATACTCAGCATCGACGACCTCCGCAGCATCACCATTTCCAGCAGCGACGTTTCCTCCACCAGCAGCGGTGGCTCCGGCGAGATTCCGCCGATGATGAGGGAGAAGTGTGTGGGGAGAAAGAACAAGGGAGTGAGCTGGGGACAGAGTTCAGTGATCGGAAGAAGGAAAGAGATGGAAGATGCTGTTGCTGTTATTCCAGGATTCATTTCTCGTATGTGTGATCACGTTGGAGGTTGTACGGCTCCTGGTTCTAGATCCTCCGATGAGATCTCACCGGTTCATTTCTTCGGCGTTTACGACGGCCACGGTGGATCTCAGGTGGCTAAATTTTGTGCCAAACGGATGCACCTTGTTATAGCAGAAGAGTGTGACAAAGAAATGGCTGGTGGCACTGAATGGCAGAGAAGGTGGGAGGCTGTATTTGCCAAAGGCTTTGAGAGAACTGATACTGAAGTCCTATTAGATGCAGTTGCACCAGAAATGGTAGGATCTACTGCTTCTGTGGTCGTTCTATCTGGTTGCCAAATTATTACATCTAATTGTGGTGACTCAAGGGTAGTTCTTTGCCGTAGGACCCAAACAATCCCCTTGACCGTGGATCAGAAGCCTGATAGACAAGATGAACTCCTGAGAATTGAAGGAACAGGAGGAAAAGTGATAAACTGGAATGGAGCTAGGGTGTTTGGTGTCCTTGCCATGTCCAGGGCCATAGGAGACAGGTACTTGAGGCCATGGATTATTCCAGTGCCCGAGATAACTTTCACAGCAAGAACTGAGGAGGATGAATGTTTAGTTTTGGCAAGTGATGGACTCTGGGATGTAATGACCAATGAAGAGGTTGGGGAAGTAGCGCGACATATTCTAAGGCGGCGACGCAGGTCATCCTTGTCAACGGAAGAAATATCTCCAGCACAAGTTGTTGCAGATAGCCTGACTGAGATTGCATATGGTAGAAACAGCGAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCAAAGAGAAGACGCCAGCTAAGGCCTCCTTTAGTTTCTTAA 1119 0.4808 MEPSEDKQHQRVDSEFTSTSSASGISSILSIDDLRSITISSSDVSSTSSGGSGEIPPMMREKCVGRKNKGVSWGQSSVIGRRKEMEDAVAVIPGFISRMCDHVGGCTAPGSRSSDEISPVHFFGVYDGHGGSQVAKFCAKRMHLVIAEECDKEMAGGTEWQRRWEAVFAKGFERTDTEVLLDAVAPEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQTIPLTVDQKPDRQDELLRIEGTGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTEEDECLVLASDGLWDVMTNEEVGEVARHILRRRRRSSLSTEEISPAQVVADSLTEIAYGRNSEDNISIIVVDLKSKRRRQLRPPLVS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1079 372 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Lal16g1079 372 Gene3D - 62 367 IPR036457 -
Lal16g1079 372 ProSiteProfiles PPM-type phosphatase domain profile. 72 358 IPR001932 -
Lal16g1079 372 SMART PP2C_4 62 356 IPR001932 -
Lal16g1079 372 MobiDBLite consensus disorder prediction 40 61 - -
Lal16g1079 372 PANTHER ALPHABET, ISOFORM E-RELATED 54 367 - -
Lal16g1079 372 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 54 367 - -
Lal16g1079 372 Pfam Protein phosphatase 2C 83 351 IPR001932 -
Lal16g1079 372 SUPERFAMILY PP2C-like 59 359 IPR036457 -
Lal16g1079 372 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g1079 372 CDD PP2Cc 74 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1079 Lal-Chr16 7233215 7240317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1079 73 368 PP2C-type Phosphatase Gene Family AT4G26080 49.524 6.79e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1079 K14497 - gmx:100793293 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1079 16 7233215 7240317 Lal16g1079 16 7233215 7240317 ECH