Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1078 ATGTCACTGCCATCATCCAACCATTCCATAGATTTGGGAAGTTTCAATATGGACGAGGCTCTTGTGGTGGCCGGAGAATCATGCCGCCAATTGGCCGTGTCAAAGACCGTTGTGTCAAACTTGCCGGCGGCTGAGGGGGTAATGACGGAGGAAGATGTTTGCTCCATTTGCATGGAAGGATTTGGAAGCAACAACATAAATGAAGGAACCAAAAAAGTCCCGTGCGGTCACGTGTACCACTCAAACTGCATCACCCTTTGGTTCTCTTACTCCAACTCTTGCCCTATTTGCCGCAGCCATATTTACCCCTCTCCCTCTAGTTCCATTCCACTTTAA 336 0.4851 MSLPSSNHSIDLGSFNMDEALVVAGESCRQLAVSKTVVSNLPAAEGVMTEEDVCSICMEGFGSNNINEGTKKVPCGHVYHSNCITLWFSYSNSCPICRSHIYPSPSSSIPL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1078 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 108 IPR013083 -
Lal16g1078 111 SMART ringv_2 53 98 IPR011016 GO:0008270
Lal16g1078 111 SMART ring_2 54 97 IPR001841 -
Lal16g1078 111 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 11 101 - -
Lal16g1078 111 ProSiteProfiles Zinc finger RING-type profile. 54 98 IPR001841 -
Lal16g1078 111 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 101 - -
Lal16g1078 111 Pfam Ring finger domain 53 98 IPR001841 -
Lal16g1078 111 SUPERFAMILY RING/U-box 47 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1078 6 106 C3H Transcription Factor Family AT4G10150 30.556 1.10e-11 57.4