Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1072 ATGGCTGAGCTACAAGGCTCAGAGATAAACACAAATACTAACCCGTCTTCTTCTTCTTCACCGTTGTCACTAACTTTCACTATCAATGAACCCAAGGTTTCATTAACGGAGCCCCAAATACCCGACCCGGATAAGAAAAAACCGAAGAAACGGCCCAGAGAAAGTAACAGCAAGCACCCAGTTTACAGAGGGGTTCGAATGCGTGCATGGGGAAAATGGGTATCAGAAATCCGAGAACCGAGAAAGAAGAACCGGATCTGGCTAGGAACCTTCACAACCCCAGAGATGGCGGCGCGTGCACATGACGTGGCGGCTATAACGATAAAAGGCAGTTCCGCCATCCTAAACTTCCCTGAACTCGCCGGGTCATTGCCCCGACCCGATTCAAATTCGCCCCGGGATGTTCAAGCAGCTGCAGCTAAAGCCGCAGCGATGGAAGTGTTGGAACCACAAACGACGTCGCATTTGTCGTCGTCATCATCATCATCATCGACGAATTCATGTTGTGAAGAATCACATGAGGAACTGGGGAAGATAGTGGAACTTCCACATTTGGGTACAAGTTATGAATCACCCGACCCGAGTAATAATGAGTTGGTGTTTTTTGACCCGGTTGATGGGTGGCCCAATAACTGTTATAACATTTATGATGGTGGGTACTATGTTGGGGATCACATTTCAATGCATGACTATTACTCAGAGAGTGTTATGCTTTCTAGTTTTGAAGCTTCTTTGTGGCAACATTAA 747 0.4685 MAELQGSEINTNTNPSSSSSPLSLTFTINEPKVSLTEPQIPDPDKKKPKKRPRESNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFTTPEMAARAHDVAAITIKGSSAILNFPELAGSLPRPDSNSPRDVQAAAAKAAAMEVLEPQTTSHLSSSSSSSSTNSCCEESHEELGKIVELPHLGTSYESPDPSNNELVFFDPVDGWPNNCYNIYDGGYYVGDHISMHDYYSESVMLSSFEASLWQH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1072 248 MobiDBLite consensus disorder prediction 1 62 - -
Lal16g1072 248 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 MobiDBLite consensus disorder prediction 150 170 - -
Lal16g1072 248 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Lal16g1072 248 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Lal16g1072 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 247 - -
Lal16g1072 248 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 MobiDBLite consensus disorder prediction 149 170 - -
Lal16g1072 248 MobiDBLite consensus disorder prediction 39 61 - -
Lal16g1072 248 MobiDBLite consensus disorder prediction 1 34 - -
Lal16g1072 248 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Lal16g1072 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1072 Lal-Chr16 7169028 7169774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1072 49 209 AP2-EREBP Transcription Factor Family AT5G25810 61.078 3.55e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g1072 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1072 K09286 - pvy:116134347 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1072 16 7169028 7169774 Lal16g1072 16 7169028 7169774 ECH
Lal16g1072 16 7169028 7169774 Lal23g0601 23 8796188 8796895 LSH
Lal16g1072 16 7169028 7169774 Lal8g0372 8 2498798 2499466 PCT
Lal8g0372 8 2498798 2499466 Lal16g1072 16 7169028 7169774 PCT