Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1067 ATGGAACGCATCGTTGGCGGCAAGTTCAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGCTACGCGTATCGATACCTTTGAGATCGTCGCCGTCAAGATCGAGAATAGTAAAACAAAGCATCCACAATTGCTTTATGAGGCGAAGCTCTACAATATTCTTCAAGGAGGAAGTGGGATTCCGAGCATAAAATGGTTTGGAGTAGATGGGGAGGAAAATGTGCTTGTGATTGATTTGCTGGGGCCGAGTCTTGAAGACCTCTTTGTGTATTGTGGAAGGAAGTTCTCGTTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATCGGGATATAAAGCCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTATGGGCTTGCAAAACGATACCGGGACTCCGCAACTAATCGCCACATCCCCTACAGAGAGAACAAAAACTTGACAGGGACTGCACGCTATGCAAGTTGCAACACCCATCTTGGGATTGAGCAAAGCCGGCGAGATGACTTGGAGTCACTAGGATATGTACTTCTGTACTTTCTGAGAGGAAGGCATGTCATTCTTATCTTCCTGCTTTTCTTCTACAACCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAACAAAAGTATGATAAAATATGTGAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTTGAGTTTGCATCATACTTCCATTACTGCCACTCTTTGATGTTTGAACAACGACCTGATTATGGGTTCTTGAAGCGCCTATTTAGGGACCTATTTGCTCGAGAAGGTTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTTCAGCCTCCCATATCTCCAGTTCCTGGAGCACGTAACAGTCATGCAATGCCAATGGATGTTGACAACCATCAAGGGCATGGCTCCCAGCGCATTAGATCAGACAATGCTACTGGTTCCGGTGTTAAAACTCAGTTTGCATTACCAGAAGCTAAAATTTGGAGTTCTGAAAATTCTCTTAACAAGAATACTTTTGGGGAAGCAAATATGCCCTCTACTTCATATACTCCTGCTAGTACATCAAGATGGAACTCCTTGAAGCCTGGCTTGTCTACTGAAGCTTCCAACCCTGGACATGGGCAAGGCAGTAAAGTCGGCCCTTCAAGTAGCTGGATGTCATCTCTGCAAAACATGTCTTCTTCCAAATGA 1311 0.4325 MERIVGGKFKLGRKIGSGSFGEIYLATRIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDGEENVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKRYRDSATNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGRHVILIFLLFFYNLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLMFEQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQAQKNRVQPPISPVPGARNSHAMPMDVDNHQGHGSQRIRSDNATGSGVKTQFALPEAKIWSSENSLNKNTFGEANMPSTSYTPASTSRWNSLKPGLSTEASNPGHGQGSKVGPSSSWMSSLQNMSSSK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1067 436 PANTHER CASEIN KINASE-RELATED 1 420 - -
Lal16g1067 436 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal16g1067 436 MobiDBLite consensus disorder prediction 385 436 - -
Lal16g1067 436 Pfam Protein kinase domain 10 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1067 436 Gene3D Transferase(Phosphotransferase) domain 1 1 345 - -
Lal16g1067 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal16g1067 436 SUPERFAMILY Protein kinase-like (PK-like) 4 302 IPR011009 -
Lal16g1067 436 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 1 420 - -
Lal16g1067 436 ProSiteProfiles Protein kinase domain profile. 9 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1067 436 SMART serkin_6 9 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1067 436 MobiDBLite consensus disorder prediction 315 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1067 Lal-Chr16 7137482 7145199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1067 3 153 Miscellaneous Gene Families AT3G23000 31.646 2.44e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal16g1067 Pkinase 1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1067 K08960 - gmx:100779936 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1067 16 7137482 7145199 Lal16g1067 16 7137482 7145199 ECH
Lal16g1067 16 7137482 7145199 Lal8g0378 8 2532939 2539474 PCT
Lal16g1067 16 7137482 7145199 Lal10g1022 10 17381156 17387325 PCT
Lal8g0378 8 2532939 2539474 Lal16g1067 16 7137482 7145199 PCT
Lal10g1022 10 17381156 17387325 Lal16g1067 16 7137482 7145199 PCT