Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1061 ATGAGAGAAGCCATGAATAGAGGTGTTTTGCAGAACCCACCGGTGCAACAAATGATGGGTGAGAACCCTAACAGTTTGTGGAATATCAATAACATGCACCCTTCTTCTCAGCAAGCTTCTCCTTTCTTCTCCAATACTACAAATTTTCTATCTCCATATGCTCCCACTCCTTCTTTTCCTTTTGCTTCTTTGCATGATAATGAAGAGGAGCTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGACTGGTGTCTGAAGAAGATAAGGCGGGTATGTCCCAAATGCTAAGTCAAGCTCAAAATGCTCCTTTTGTTGGTGTTAAGCAAGAAAGCTCGATAAACAGCTATGTATATGGGCATGGAAATGAAGAATTTGAGGCTTCAAAATCTACTACATGGTCTCAAATAGTGCCAATTTCTTCTCCCAAATCTTGTGTGTCAAGTTTGAATAGCAGCATGTTGGATTTCACTAACAACATTAAGGTGGATGCAAGGTCTCCTCCACTAGATCGATCTTCTGAGTGCAATAGCAGTGGTGGGGCACTGAAGAAAGCTAGGGTTGAACCATCAACAACCTTCAAGGTGAGAAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAAATCGTTTCCCCCTTTGGAAAGACTGACACAGCATCTGTCTTATTAGAAGCTATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTACCATACTTTGGCAATAGATCAGGAAACATGAGGCACCAACAACAATTTGTCCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGGCAGCTGCTGAATGAAAACTGCTTGAAGAGGAAAGCTTCCATTAACCAGGATTCTCAAGAAGAACCAAAGGATCTGAAGAGTAGAGGACTATGTTTGGTTCCAGTTTCACACACACTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCATTTGGTGGAGGATTTCAATAG 996 0.4237 MREAMNRGVLQNPPVQQMMGENPNSLWNINNMHPSSQQASPFFSNTTNFLSPYAPTPSFPFASLHDNEEELPESWSQLLMSGLVSEEDKAGMSQMLSQAQNAPFVGVKQESSINSYVYGHGNEEFEASKSTTWSQIVPISSPKSCVSSLNSSMLDFTNNIKVDARSPPLDRSSECNSSGGALKKARVEPSTTFKVRKEKLGDRITALHQIVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYFGNRSGNMRHQQQFVQGEKNCLFPEDPGQLLNENCLKRKASINQDSQEEPKDLKSRGLCLVPVSHTLQVGSDNGADYWAPAFGGGFQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1061 331 Gene3D - 183 255 IPR036638 GO:0046983
Lal16g1061 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 317 - -
Lal16g1061 331 MobiDBLite consensus disorder prediction 1 21 - -
Lal16g1061 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Lal16g1061 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 246 IPR036638 GO:0046983
Lal16g1061 331 PANTHER OS05G0228400 PROTEIN 20 317 - -
Lal16g1061 331 CDD bHLH_AtbHLH_like 192 241 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1061 Lal-Chr16 7097197 7102705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1061 5 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 40.058 1.78e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1061 - - gmx:100785156 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1061 16 7097197 7102705 Lal16g1061 16 7097197 7102705 ECH
Lal16g1061 16 7097197 7102705 Lal10g1283 10 18938103 18939476 PCT
Lal10g1283 10 18938103 18939476 Lal16g1061 16 7097197 7102705 PCT