Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1056 ATGGGAGAAGGTGAGGGTGTTGATTATCCTCCAAAGAATGTATCATCATCTGATGATGCTGCTGCTGCATCTACACTCGATGTTCCGGCTAAGAAGCTCGCGAGGCAGCTCGATTTCACGGGCTCTGGTGGGGCTCTGCCATTGCCTGAACAGCTACAGCCACAATCACAGTCGCAGCCGCAACAGCTTCAGCTTGCTGTGGGACAGAGTCAGTTACCCTTGCAGCCACAGCTGCCATTGCCTCAGGCTCTGGCTCAATCCGTGATTTCTACGCAGGCGCTCCTGCCGCAGGCGCCTCATCCTTCTGTGAGGGTTGGGAAACCAGATTCTCCAAAAGCAAAATCAAGACCCAACTTTGAAATTAAAGACTGTACTCCAAAGAAGCAAAAGCAGTGCAATTGCAAACACTCAAAATGCTTAAAGCTATACTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTGGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCGAGCAGCCCTCATGGAGCACGTGGTAGGAGGGAGGAGGCTGGGGAAGTTTTAATATTGGGGAAGCATAACAAGGGGTGCCATTGTAAAAAATCTGGTTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAAAGACAAGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTTTATTCAGCAGGCTGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCGGGTTTTTCATCACCACCTCTTTCAAAGAAAAGAAAAGGTCAGGAACTATACTTTGGGCCAACAACAAAGGATCCATCTGTTGGCAGGCTGGGACAGCAGGCAAACCACCTTAGGAGTCCTGCACCCTCGTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGAACTTCAACAGTAGGTCCTTCAAAAGTCATATACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTTAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCAAAGACACTGACAGACCAGAAAAACTTAAAGGATAAGCATACAGAAGATCTGCCGGAAACTTCTCATGCTTCTTCAACTCAAGAGCAATTACCAAGCCAAAAGGAAGCCGATGATTGTTCGAGTGCAAACCAAATAGATAAAATCAGCCCAGATAATTCCAGTTCAGATGGTGCTGATGCCCCGAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTAATGTGCGATGAGCAAGATCCAATGTTCATGGCTGCTGCCTCCCCCATTGGGTCAATGGCCCATGCTTGCAACACGTCGTCACAATTGCCTTATGGACAAGGAATGACAGATGTCTATGCAGAGCAAGAAAGGATTGTGTTGACAAAGTTTAGAGATTTTCTTAACAGGGTTATCACTATGGGAGAAATAAATGGCAAGTTGACATTTTCCTCTCCTCTAATTATAATTCTTCTTTCTGAAAATTTCACAAATCCCATTCTTAGTTTTGGGGTTTGGCAAATAGATCCTCCACATTCATTTTTTGCAAAAACAAAGTGTTCTTCATTAGCCCGAAGTGAATTAGAGAGTCAAAATGATCCAATCATCAATGGCACCGGAAATGCCAGTGCCGAGACAACACAACAACAGGGAGCGGCCACTAGTATTGTTCCACCCATGGCAACAAGTATGAGTACAACTTCATCATTAGTCCCTAATAATGTTGTTCCTGAAAATGGGGAAGCTAAGTTGGAGGTTGAAAAAGATATTTGA 1890 0.445 MGEGEGVDYPPKNVSSSDDAAAASTLDVPAKKLARQLDFTGSGGALPLPEQLQPQSQSQPQQLQLAVGQSQLPLQPQLPLPQALAQSVISTQALLPQAPHPSVRVGKPDSPKAKSRPNFEIKDCTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGARGRREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVFIQQAANAAITGAIGSSGFSSPPLSKKRKGQELYFGPTTKDPSVGRLGQQANHLRSPAPSSSLSPIPGARVGTSTVGPSKVIYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLKDKHTEDLPETSHASSTQEQLPSQKEADDCSSANQIDKISPDNSSSDGADAPKGRPMSPGTLALMCDEQDPMFMAAASPIGSMAHACNTSSQLPYGQGMTDVYAEQERIVLTKFRDFLNRVITMGEINGKLTFSSPLIIILLSENFTNPILSFGVWQIDPPHSFFAKTKCSSLARSELESQNDPIINGTGNASAETTQQQGAATSIVPPMATSMSTTSSLVPNNVVPENGEAKLEVEKDI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1056 629 MobiDBLite consensus disorder prediction 571 629 - -
Lal16g1056 629 ProSiteProfiles CRC domain profile. 128 252 IPR005172 -
Lal16g1056 629 MobiDBLite consensus disorder prediction 288 340 - -
Lal16g1056 629 Coils Coil 162 182 - -
Lal16g1056 629 MobiDBLite consensus disorder prediction 571 614 - -
Lal16g1056 629 MobiDBLite consensus disorder prediction 39 64 - -
Lal16g1056 629 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
Lal16g1056 629 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 129 164 IPR005172 -
Lal16g1056 629 MobiDBLite consensus disorder prediction 386 452 - -
Lal16g1056 629 MobiDBLite consensus disorder prediction 49 64 - -
Lal16g1056 629 SMART CXC_2 212 253 IPR033467 -
Lal16g1056 629 SMART CXC_2 127 167 IPR033467 -
Lal16g1056 629 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g1056 629 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 598 - -
Lal16g1056 629 PANTHER TESMIN/TSO1-RELATED 25 598 IPR028307 -
Lal16g1056 629 MobiDBLite consensus disorder prediction 312 338 - -
Lal16g1056 629 MobiDBLite consensus disorder prediction 97 118 - -
Lal16g1056 629 MobiDBLite consensus disorder prediction 400 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1056 Lal-Chr16 7066148 7072627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1056 1 559 CPP Transcription Factor Family AT4G29000 52.891 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lal16g1056 TCR 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1056 - - gmx:100786353 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1056 16 7066148 7072627 Lal16g1056 16 7066148 7072627 ECH