Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1047 ATGTCAACCACCCCTTCTCCCGGCGCGTCTCCGTCGTCGAATTTAACTCCGGCCACCAACACCACTTCTTCTCCTCCCTCCCCCTCCTCACCCTCACCATCTACCCCTTCCCCCACCCCTCCCTCCCCGTCCAAGCCACCACCTTCTCCTGCGCCGGAATCTCCCCCAGCTTCTCCGCCGCCGCCCACTCCTTCATCCCCCTCTCCGCCGCCGCCAACTCCTTCATCCCCTTCTCCGGCCACTCCTTCACCTCCTTCGCCGCCCACTCCTCCATCTCCTTCAAATTCAACGCCGCCGGCCACCCCTTCAGTATCTCCTCCGCCGTCAACTCCGACGACTCCGGCTACCGGAAATACTCCGCCTGCTCCAGTCACTCGTCTCTCTCCTCCTCCATCTTCCAATGTCTCGCCGGGCACTCCATCGTCGTCAAGTATTTCTACCGGAGTTATTGCCGGAGTTGTGGCGGGGGTGGTGGGGGTTATTGTGGTGTTCTCCCTTTTGTGCTTTTGTCTTAGGAAGAAGAAGAGAAGACGTGAAAGTCAATACTATCCTCCACCACCACCACAAGGACCTAAAGTTGATCCATATGGTAGATCCCCAGCACATTGGCAAAACAATGCTCCCCCTCCAACGCCACCACCTCCACCTCCACCTAAAACTCCACCTTATGTGAATAACAGTGGTGGGTCTAGCTCAAACTATTCAGCTGGTGGGTATCCACTTCCCCCTTTTTCTCCAGGCATGGGATTGAGCTTTTCAAAGAGCACATTTACATATGAGGAGTTGGCGCGAGCTACGGATGGCTTCTCTGATGCCAACCTCATTGGACAAGGTGGATTTGGATATGTGCATAAAGGTGTTCTGCCAAATGGCAAGGAGGTTGCAATCAAGCAGCTAAAGGCTGGAAGCGGGCAAGGGGAGCGTGAGTTTCATGCTGAAATAGAGATAATTAGCAGGGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCACCACTGGGATACAAAGGCTGCTTGTTTATGAATTTGTTCCAAATAATACATTGGAGTTCCATTTGCATGGTAAAGGGCAACCTACTATGGATTGGCCCACAAGACATAGAATTGCTTTAGGATCTGCAAAAGGACTAGCGTATCTTCACGAGGATTGTCATCCTAAGATCATTCATCGTGATATCAAAGCTGCTAACATACTTCTGGACTTCAAGTTTGAAGCAATGGTTGCAGATTTTGGCTTAGCAAAGTTTACATCTGATGTCAACACTCATGTTTCCACTAGAGTGATGGGAACTTTTGGGTATCTAGCTCCAGAATATGCTGCAAGTGGAAAGCTTACAGACAAATCAGATGTTTACTCCTTTGGAGTTATGCTCTTGGAATTAATTACTGGTCGTCGACCAGTTGATTCAACTCATACTTACCAAGAGGATAGTTTGGTAGACTGGGCAAGGCCTGTGCTCACACATACTTTAGAAGATGAAAATTTTGAATCTCTGGTTGATCCAAGGCTCCAGAATGAGTATGACTCGAATGAGATGGCTTGCATGGTGGCATGCGCTGCAGCAGCCATAAGATATTCAGCGAAGCGTCGACCAAAGATGAGCCAGATTGTTCGTGCCCTGGAAGGAGATGCGACTTTAGAAGATCTTAGTGACGGTAATAAACCTGGAAACAGCACTGTCTACGGTTCTCATGCAAACTCAGATTATGACTCTGCACAATACAAGAAAGACATGAATAATTTCAAAAAATTAGCATTTGAAAGCCAAGAGCATGGCGGCGCCAGCAGTGAGTACAATGGAGTTACAAGTGAGTATGGTGTAAACACATCTGACTCGAGCGGTGAAAGCCATAACCAGCGGACCAAAAGGGAAATGGAAATGAGAAAGATGAAGAACAATCAAGGTTTCAAGGGAAGCTCTTGA 1929 0.4857 MSTTPSPGASPSSNLTPATNTTSSPPSPSSPSPSTPSPTPPSPSKPPPSPAPESPPASPPPPTPSSPSPPPPTPSSPSPATPSPPSPPTPPSPSNSTPPATPSVSPPPSTPTTPATGNTPPAPVTRLSPPPSSNVSPGTPSSSSISTGVIAGVVAGVVGVIVVFSLLCFCLRKKKRRRESQYYPPPPPQGPKVDPYGRSPAHWQNNAPPPTPPPPPPPKTPPYVNNSGGSSSNYSAGGYPLPPFSPGMGLSFSKSTFTYEELARATDGFSDANLIGQGGFGYVHKGVLPNGKEVAIKQLKAGSGQGEREFHAEIEIISRVHHKHLVSLVGYCTTGIQRLLVYEFVPNNTLEFHLHGKGQPTMDWPTRHRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVYSFGVMLLELITGRRPVDSTHTYQEDSLVDWARPVLTHTLEDENFESLVDPRLQNEYDSNEMACMVACAAAAIRYSAKRRPKMSQIVRALEGDATLEDLSDGNKPGNSTVYGSHANSDYDSAQYKKDMNNFKKLAFESQEHGGASSEYNGVTSEYGVNTSDSSGESHNQRTKREMEMRKMKNNQGFKGSS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1047 642 SUPERFAMILY Protein kinase-like (PK-like) 245 542 IPR011009 -
Lal16g1047 642 MobiDBLite consensus disorder prediction 594 617 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 177 238 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 224 238 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 1 145 - -
Lal16g1047 642 SMART serkin_6 269 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1047 642 MobiDBLite consensus disorder prediction 548 569 - -
Lal16g1047 642 ProSiteProfiles Protein kinase domain profile. 269 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1047 642 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 599 - -
Lal16g1047 642 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 599 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 594 642 - -
Lal16g1047 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Lal16g1047 642 MobiDBLite consensus disorder prediction 24 136 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 205 223 - -
Lal16g1047 642 Gene3D Transferase(Phosphotransferase) domain 1 345 556 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g1047 642 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Lal16g1047 642 Gene3D Phosphorylase Kinase; domain 1 248 344 - -
Lal16g1047 642 PRINTS Proline rich extensin signature 10 26 - -
Lal16g1047 642 PRINTS Proline rich extensin signature 31 43 - -
Lal16g1047 642 PRINTS Proline rich extensin signature 43 64 - -
Lal16g1047 642 PRINTS Proline rich extensin signature 64 80 - -
Lal16g1047 642 MobiDBLite consensus disorder prediction 618 633 - -
Lal16g1047 642 Pfam Protein tyrosine and serine/threonine kinase 274 542 IPR001245 GO:0004672|GO:0006468
Lal16g1047 642 MobiDBLite consensus disorder prediction 553 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1047 Lal-Chr16 6985091 6989626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1047 94 613 Trihelix Transcription Factor Family AT1G70460 48.519 3.41e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal16g1047 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1047 - - gmx:100781944 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1047 16 6985091 6989626 Lal16g1047 16 6985091 6989626 ECH