Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1038 ATGACAGGCCTTGAATATGATCAAGCCAGCTCTATCCACAAGGTCCCCGACATCAAGTTCACCAAGCTCTTCATTAATGGAGTTTTTGTTGATTCTGTTTCAGGAAAGACTTTCGAGACAATAGATCCAAGAACAGGAGAGGTTATAACAAGGATCAGCGAGGGAACGAAAGAAGACATAGATATTGCTGTAAAGGCAGCACGTTACGCTTTTGATTCAGGTTCATGGCCTCGCATGCCTGGTGCGGAAAGAGCAAAAATTATGATGAAATGGGCAGAACTAATTGATGAAAACATAGAAGAAGTAGCAAAACTAGATGCCATTGATGCAGGAAAATTATACCATATGTGTAAGGCCGTGGATATTCCTGGAGCAGCAAAAACTCTACGTTACTATGCTGGTGCTGCTGATAAAATTCACGGTGAAGTATTAAAAATGTCCCGAGAATTTCATGCATATACATTGAAAGAACCAATTGGTGTTGTGGGACACATAATTCCTTGGAATTTCCCCACTACAATGTTCTTCATCAAAGTTAGTCCTTCCTTAGCTGCTGGTTGCACCATGGTCCTTAAGCCTGCTGAGCAAACACCACTTTCTAGTTTGTTTTATGCTCATCTTGCTAAACTGGCTGGAATCCCAGATGGAGTATTGAATGTGGTACCTGGATTTGGCCATACAGCTGGTGCTGCAATAAGCTCACACATGGACATTGATGCGGTTAGCTTTACTGGTTCAACACAAGTAGGCCGTGAAGTAATGCAGTGTGCAGCTAGAAGTAACTTGAAACATGTTTCACTTGAATTAGGAGGCAAGTCACCTCTTATAATTTTCAATGATGCTGATATAGATAAAGCTGTTGAGCTTGCTCTCTTGGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCTCGTGTGTTCGTTCAAGAAGGGATTTATGATGAATTTGAGAAGAAGTTGGTAGAAAAGGCAAAAGCTTGGGTCGTTGGAGATCCTTTTGATCCTAAAGTTAACCAAGGGCCTCAAGTTGATAAAAAACAATTTGAGAAAATCCTTTCCTATATAGAGCATGGAAAGAGAGAAGGAGCTACTCTTTTGACAGGAGGTAAAAGAGTAGGCAATAAGGGCTACTTTATTGAGCCTACAATTTTCTCCAATATAAAGGAGGATATGCTTATAGCTCAAGATGAAATATTTGGCCCTGTGATGGCGCTGAAAAAGTTCAAGACAATTGATGAAGCAATTAAGAGTGGCAACAATAGTAGATATGGGCTAGCAGCAGGAATTGTAACAAAGAACTTGGATATAGCAAATACTGTGTCAAGGTCCATTCGTGCAGGCACTATTTGGATCAACTGTTATTTTGCATTTGGTGACGATGTTCCTTTTGGAGGGTATAAAATGAGTGGTTTTGGTAAAGATCATGGATTGGATGCCCTTCACAAATACCTACAAGTCAAATCTGTTGTTACTCCCATTTACAATTCTCCTTGGCTTTGA 1506 0.4031 MTGLEYDQASSIHKVPDIKFTKLFINGVFVDSVSGKTFETIDPRTGEVITRISEGTKEDIDIAVKAARYAFDSGSWPRMPGAERAKIMMKWAELIDENIEEVAKLDAIDAGKLYHMCKAVDIPGAAKTLRYYAGAADKIHGEVLKMSREFHAYTLKEPIGVVGHIIPWNFPTTMFFIKVSPSLAAGCTMVLKPAEQTPLSSLFYAHLAKLAGIPDGVLNVVPGFGHTAGAAISSHMDIDAVSFTGSTQVGREVMQCAARSNLKHVSLELGGKSPLIIFNDADIDKAVELALLGILYNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVNQGPQVDKKQFEKILSYIEHGKREGATLLTGGKRVGNKGYFIEPTIFSNIKEDMLIAQDEIFGPVMALKKFKTIDEAIKSGNNSRYGLAAGIVTKNLDIANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLDALHKYLQVKSVVTPIYNSPWL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1038 501 SUPERFAMILY ALDH-like 16 497 IPR016161 GO:0016491
Lal16g1038 501 Pfam Aldehyde dehydrogenase family 29 491 IPR015590 GO:0016491
Lal16g1038 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Lal16g1038 501 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 5 501 - -
Lal16g1038 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 501 - -
Lal16g1038 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Lal16g1038 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Lal16g1038 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1038 Lal-Chr16 6904433 6909191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1038 14 501 Aldehyde Dehydrogenase Gene Family AT3G24503 72.188 0.0 749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1038 16 6904433 6909191 Lal10g1003 10 17230807 17236981 PCT
Lal10g1003 10 17230807 17236981 Lal16g1038 16 6904433 6909191 PCT