Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1030 ATGGCAAGTCGATTGAAGGAAGATGAGAAAAATGAAAAAATAATTCGAGGTCTTCTCAAACTTACACCGAATCGCAGGTGTATCAATTGCCACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGAGAATTTACACATAGAGTAAAATCAGTTTCGATGGCTAAATTTACTTCAGAAGAAGTTAGCGCACTTCAGGAAGGAGGAAATCTGCGTGCAAGAGAAATTTATTTTAGAGAATGGGATCCGCAGCATCAGTCTTTACCTGATAGCAGTAATGTTGGCAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAAAGGGCCTATGACAAACCCCCAAGAGTGAAGACGGGCGATAGCGATGATTTATATGAAAAGAGGAGGATGGAGACGTCTCATGGAGGATCTAAAAGCCCTCCATATGAGGACACATATGAACGTCGTTATAGTGACAGGTCTAGTCCTGGCAGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAACCCTGGCCGCCCTCTAGTAATCAATGATTGGCGTCGTGAAGATAGATTTGGAAATGGAAGGAAAATTGATGATCATAGAATATGTGATGGAGATATTAAGATGGACAGCCAATCTCCTGAGCGAGCCAAAGATCTTGGTTCTTCAAGCCCACCTGTTGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTTGTACCTCTTCGAATCGGAGAACCCCCGAAACCAAACAGTGGAAGGGCCTCTAACGACTCAGGGCTAACACAGAGAACTGCATCCTCCAGTAGCTTGGCATCCAGCAATGGAAACCAAGTGGAAGTAAAGCTTGAAACTACTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTGGCTCAACCTGTTGTGATGCCAGCAAATTCTGGTGATAATAATTGGGCCTCCTTTGATTTTGCTCCTGAGGCAAAATCAGTTCAGGGTTCTACAAATGCAAATCCACTTGAATCTGTGTTCTCTCAATTGTCTGTACCAGCAGCTTTAACTGCTCATGTGTCTGGAGCTCCAGGTGGTCCTAAACATGCACCAGCTATTCCTGGGAGCGGTGTGTCTTTTGCAGGATCATCTCCTACTGCTGCCGGAGCTCCAACTGTTAGTAGCTTTTCAGCATTCTCACCTAGTGGTGCTTCAGTACCATATGCAGGATTGGCAACAATATCCCCACTCAATAATGCAGGACAGTTGGCTGGTTTACACTACCAACAACCTTCGTTCCCTGCAACTGTTAGTCACTCTACTGCTCAGCAATTTACACAACCAGTAGGTGGTGCTTCGAATAATCAGCCCTGGAATATACCTTCTGTACCGACAGTACAGGGGCATGCAAGCACATCAATGGCACAAACATCCAATCATGCCAATGAGGCTAATTCCAGTGTTGTTTCACAACCTTCTACTGTAGATGTAAAACCAGTTGGAAGAACTGAACTTCCAGAGGATCTATTCACTGTAAAATATTCACCCTTCCCTGCTCCAGTTCCAGGTTGGCAAATGGGTGCACCACTTGGCATGGGTACTTCAATTCAATATAATAATGCGGTGCCCATTCCAAGTTTTCCGCAACCATCAAAATCATCAAATCCATTTGATGTTAGCAATGAACCAACTCCAGTTCAGGCCTCAACTTTTCCTTCCCTGTCATCTTTGCAAGGTGCTCTTCCTAGTGTAACTCCAGGCTCAATGCACCCTTCAAGCCTGGGTAATCCATCTTTTGGCTGGAATCCACCCTTATCATCATCATATGTATCATTACTGCCTCCACAAGCACAAACTCTTGCACCAGCAGTGGGACCAGGGGCATATATGGGGCCTCAAATGCCAACTAACAGCACAATACCAAGGTATCAAGGAATTGGGAATTTTGGTGCTAATGCGGCTGCTTTTGGCGTCTCCAATCCAGATCAGCAGCTAACTGGGTTCTCTACAATCCCTGCAACCCCAAACCCCTTCCCCGCAGGAGGGAACCCTTTCGGATAA 2097 0.4483 MASRLKEDEKNEKIIRGLLKLTPNRRCINCHSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSEEVSALQEGGNLRAREIYFREWDPQHQSLPDSSNVGRLRDFIKHVYVDRRFTGERAYDKPPRVKTGDSDDLYEKRRMETSHGGSKSPPYEDTYERRYSDRSSPGRRSPGYDQESRQYGDYKRNPGRPLVINDWRREDRFGNGRKIDDHRICDGDIKMDSQSPERAKDLGSSSPPVVRPVRDILGENVVPLRIGEPPKPNSGRASNDSGLTQRTASSSSLASSNGNQVEVKLETTKSLIDFDDDPEPPVAQPVVMPANSGDNNWASFDFAPEAKSVQGSTNANPLESVFSQLSVPAALTAHVSGAPGGPKHAPAIPGSGVSFAGSSPTAAGAPTVSSFSAFSPSGASVPYAGLATISPLNNAGQLAGLHYQQPSFPATVSHSTAQQFTQPVGGASNNQPWNIPSVPTVQGHASTSMAQTSNHANEANSSVVSQPSTVDVKPVGRTELPEDLFTVKYSPFPAPVPGWQMGAPLGMGTSIQYNNAVPIPSFPQPSKSSNPFDVSNEPTPVQASTFPSLSSLQGALPSVTPGSMHPSSLGNPSFGWNPPLSSSYVSLLPPQAQTLAPAVGPGAYMGPQMPTNSTIPRYQGIGNFGANAAAFGVSNPDQQLTGFSTIPATPNPFPAGGNPFG 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1030 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Lal16g1030 698 PANTHER ARF GTPASE ACTIVATOR 1 698 - -
Lal16g1030 698 MobiDBLite consensus disorder prediction 213 298 - -
Lal16g1030 698 MobiDBLite consensus disorder prediction 213 234 - -
Lal16g1030 698 CDD ArfGap_AGFG 12 122 - -
Lal16g1030 698 MobiDBLite consensus disorder prediction 271 298 - -
Lal16g1030 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Lal16g1030 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lal16g1030 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lal16g1030 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lal16g1030 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Lal16g1030 698 MobiDBLite consensus disorder prediction 128 199 - -
Lal16g1030 698 MobiDBLite consensus disorder prediction 128 152 - -
Lal16g1030 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lal16g1030 698 MobiDBLite consensus disorder prediction 159 173 - -
Lal16g1030 698 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Lal16g1030 698 MobiDBLite consensus disorder prediction 558 584 - -
Lal16g1030 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1030 Lal-Chr16 6872642 6879416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1030 15 122 C2H2 Transcription Factor Family AT4G21160 35.088 7.84e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1030 - - gmx:100781002 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1030 16 6872642 6879416 Lal16g1030 16 6872642 6879416 ECH
Lal16g1030 16 6872642 6879416 Lal23g0631 23 9044226 9051409 LSH