Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1027 ATGTCTGAATCTAAGTCAACTGGTAAGGTAATTAAGAAACAAGAATCCAAAAAAGTTTCCAGTCTTGGCCATCAGCCTCCTAGGAAGCAACACCGCAAGGGTGAAAACCCCACACGGCTGATAACTACTGACCAGTCTTCTGATTTTGGACATTCAAACTCTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCTGTAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTTTTTGACGATAACAAGGATCCTAGTCTTTGGGTGGTATGCACATCTGAATCTACTCAAGAGGGCTCCTGTGGGCTGTCTTGCCATATCGAGTGTGCCCTCCAACGTGAAAAAGTTGGAGTTGTTGATCATGGGCAACTGATGCAGCTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTCACAGGGATACTTGGATGCTGGAAAAAGCAACTAATTATAGCAAAAGATGCCCGGCGTGTAGATGTACTCAGTTATAGGATATATTTGAGCTACAGGCTGCTGGACGGGACATCAAAATTTAAAGAATTGCATCAAATTGTAGTAGAGGCTAAGGCTAAACTGGAGACAGAAGTCGGTCCAGTTAATGGTGTTTCTGCGAAGATGGCACGAGGCATTGTCAGCAGACTATCTATTGCCAGTGACATGCAAAAATTCTGTTCTCTTGCTATTGAGAAAGCTGATAGCTGGTTGGCTACTGTTCCCAGTGTAAATCCAGATTTCACAGATGGTTCACTTCCTGCTGCTTGCAAGTTTTTTTTTGAAGAGGTAACATCTTCCTCAGTCAAAATCATTTTAATTGAAATATCAAATGTATCTTCTGAGGACATCAAGGGGTACAAGCTCTGGTATTACAAGAATGGGGAGGAATTGCTCACAAAAGATCCTGTTTCTGTGTTCCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTTCAGCCTTGCACTGAATATACTTTTCGGATTATGTCTTACACCGATTCGGGTGATCTGGGCCATTCCGAGGCTAAGTGTTTCACCAAGAGCATCGAAATAATTCAAAAGAATCCCTCTTCCTCTGTTGTTATGAATCAAATAAAAGAGAGCCTTCAAACTGGAGGTACTTCTTCTGACTCCAAAATGGAGCTCCATCCGACAATGGAAGATTCTGGATTTAAGGTTCGAGACCTTGGGAAAATTTTGCGTTTTGCTTGGGCTCAAGAGCAAGGTAACTTAGAGGAGTTTTGTTGTGGTGATAAGAAAATTTGCGGTGGACAAAGTAAGATGGTCAAGCCAAAAATTCCAGAAGAGAAGTTACCTCCAGTTTCACGAGACCTTGATTTAAATGTTGCTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTCTTCCAGGGATGAACATAATGGTTGCACTTCGCTGCAGGCAGTTGAGGCAGATGATGATGCTGCTTCTCGTGATATAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGTGACTCACAAACGTGGACCCGTGGTCCTGCCGGAGAAGTGCCAGCTGTTGAGTCTCGTGTAGACATAGGTAGGAAAAGGATAGCAAGCAGAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTATGCAGATCTAGTGGTTCAATCTCTTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCGACAGAACAAGAACGCAGGGTAGTTAATACCTTCATTCAAACTCTTATTGATGATCCGAGTAGTTTGGCAGGGCAACTGATTGACTCTTTCTCTGATATTATATCCAACAAGAAGCCAAGAAATGGATTCTGTAATAAGGCTGTGGAATCAAATTAA 1950 0.4205 MSESKSTGKVIKKQESKKVSSLGHQPPRKQHRKGENPTRLITTDQSSDFGHSNSWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWVVCTSESTQEGSCGLSCHIECALQREKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLIIAKDARRVDVLSYRIYLSYRLLDGTSKFKELHQIVVEAKAKLETEVGPVNGVSAKMARGIVSRLSIASDMQKFCSLAIEKADSWLATVPSVNPDFTDGSLPAACKFFFEEVTSSSVKIILIEISNVSSEDIKGYKLWYYKNGEELLTKDPVSVFPKSQRRILISNLQPCTEYTFRIMSYTDSGDLGHSEAKCFTKSIEIIQKNPSSSVVMNQIKESLQTGGTSSDSKMELHPTMEDSGFKVRDLGKILRFAWAQEQGNLEEFCCGDKKICGGQSKMVKPKIPEEKLPPVSRDLDLNVASVPDLNEELTPPFESSRDEHNGCTSLQAVEADDDAASRDIEKNGLARSHGSGDSQTWTRGPAGEVPAVESRVDIGRKRIASRNEETHDCDSTLINGSPLCRSSGSISLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLIDSFSDIISNKKPRNGFCNKAVESN 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1027 649 MobiDBLite consensus disorder prediction 1 40 - -
Lal16g1027 649 MobiDBLite consensus disorder prediction 1 19 - -
Lal16g1027 649 Gene3D Immunoglobulins 245 346 IPR013783 -
Lal16g1027 649 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 645 IPR044514 GO:0010048|GO:0040029
Lal16g1027 649 PANTHER VIN3-LIKE PROTEIN 1 4 645 - -
Lal16g1027 649 CDD FN3 264 340 IPR003961 GO:0005515
Lal16g1027 649 ProSiteProfiles Fibronectin type-III domain profile. 256 355 IPR003961 GO:0005515
Lal16g1027 649 CDD PHD_VIN3_plant 77 141 - -
Lal16g1027 649 MobiDBLite consensus disorder prediction 497 525 - -
Lal16g1027 649 Pfam PHD - plant homeodomain finger protein 57 175 IPR032881 -
Lal16g1027 649 SUPERFAMILY Fibronectin type III 261 340 IPR036116 GO:0005515
Lal16g1027 649 Pfam Fibronectin type III domain 263 342 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1027 Lal-Chr16 6846707 6856360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1027 53 640 PHD Gene Family AT3G24440 48.099 3.28e-177 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1027 - - gsj:114418583 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1027 16 6846707 6856360 Lal16g1027 16 6846707 6856360 ECH
Lal16g1027 16 6846707 6856360 Lal15g1004 15 8062644 8067776 LSH
Lal16g1027 16 6846707 6856360 Lal23g0632 23 9056035 9065639 LSH
Lal16g1027 16 6846707 6856360 Lal8g0408 8 2756350 2767010 PCT
Lal8g0408 8 2756350 2767010 Lal16g1027 16 6846707 6856360 PCT