Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1016 ATGATGACAGATATGAAAGCTGCAAGTGCCTTGGCTGCCAAGACAGCAAGAGCTTGTGATAGCTGTCTAAGGAGAAGAGCAAGGTGGTTTTGTGCAGCTGATGATGCTTTCCTATGCCATGGTTGTGACTCTTTGGTTCATTCAGCAAATCAATTAGCCAATAGACATGAAAGAGTGAAGCTTCAATCTGCATCAAACAAGGTAACAACAACAGCACAAGCATGGCATAGTGGATTCACACGCAAGGCAAGAACCCCACGTAACAACAAGCACTTGGCACTTCAACAAAGACTAAAATACAAAGTGTTTTTCAACAATACTAATGTTCTTCCTGTTGTACCTGAACTTGGAGGTGAAGAAGAACAAGTGTTTGATGATGAAGAGAGTGAGGAACAGATGCTATGCCGTGTGCCAGTGTTAGAACCATTTGATGCTGCTGAGTTTTGCAATATATACAACAATGAACTGAGTATAGAAACTAATGCTGCTGATGAAGCAGCATGTGACTTGGACAGTTTTTCTGAGTTTCTAGCTTCAGACATGGATCTTTCTGAGTTTGCTGCTGATGTTGAAAGCTTACTTGGATCATCAGAACAAGTGTTTGATTGTAAAGAAGAATATGAAATAGATGGAAGGGGAGCAAAAGGTGCAAATGCAGTAATGAAGGTTAAAGATGAAGATAAAGCATGTCATTTTGAATCAGTTTTTAGCATGACAAATGAAGCCTTTGATTGGAACATTGATTCAGTGCTGTCAAAAGCACCACCACAAGAGGAAAAGGTTGTGGTGTCTGTGGCGGCGCCGGTGAGTAAAATGGAAACAAAGAGGGACATAATTTTGAGACTAAAGTTAAACTATGAGGAAGTTATTACTGCTTGGGCTAGTCAAGGTTCTCCATGGACAACAGAAAACCCTCCTCAGTTCAACTTTGATGAATGCTGTCCAGATTTCTTGGATTCATCAAATGGTGGAGATGTTCAATTCTCATCTTATGGAGAAGTAAGAAGCTTAAGGGGACACCTTGTAGATGAAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAGAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGAAAGTTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGTTTTGTAAAGAGGACATGTTTTGTTGGAGGACCCAATAATGGTTTTCAGCCATACCACTGA 1212 0.4018 MMTDMKAASALAAKTARACDSCLRRRARWFCAADDAFLCHGCDSLVHSANQLANRHERVKLQSASNKVTTTAQAWHSGFTRKARTPRNNKHLALQQRLKYKVFFNNTNVLPVVPELGGEEEQVFDDEESEEQMLCRVPVLEPFDAAEFCNIYNNELSIETNAADEAACDLDSFSEFLASDMDLSEFAADVESLLGSSEQVFDCKEEYEIDGRGAKGANAVMKVKDEDKACHFESVFSMTNEAFDWNIDSVLSKAPPQEEKVVVSVAAPVSKMETKRDIILRLKLNYEEVITAWASQGSPWTTENPPQFNFDECCPDFLDSSNGGDVQFSSYGEVRSLRGHLVDEGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGGPNNGFQPYH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1016 403 Pfam CCT motif 346 388 IPR010402 GO:0005515
Lal16g1016 403 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 394 - -
Lal16g1016 403 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Lal16g1016 403 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lal16g1016 403 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lal16g1016 403 CDD Bbox1_BBX-like 18 59 - -
Lal16g1016 403 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 394 - -
Lal16g1016 403 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1016 Lal-Chr16 6745663 6750661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1016 8 388 C2C2-CO-like Transcription Factor Family AT1G25440 41.943 1.78e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal16g1016 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1016 - - adu:107478728 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1016 16 6745663 6750661 Lal23g0637 23 9108944 9111405 LSH