Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1010 ATGTCCACACTAAAGAGGCTTAGAAAATCTAGTAGTGAAGATGATAATGAACTTAGAAGAGGACCATGGACTCTTGAAGAGGATAATCTTCTTGTTCAATACATTGCTGATCATGATGAAGGGCGATGGAATTTGTTGGCTAAACGTTCAGTTTCCCATCACTTTTCTGAGCCAGGTTTAAAGAGAACAGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATTTAAAGCGAGGAAATTTAACCCTTGAAGAACAGCTTCTAATTCTTGAACTCCACTCAAGGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCTGGTAGGACAGATAATGAAATCAAGAACTATTGGAGGACTAGGATTCAGAAACAAGCAAGACATTTAAAAATTGACACAGATTGCACAAAATTTCAAGACCTTGTTAGGCATTTTTGGATACCAAAATTGCTTCAAAAATCAAAAGAAACATTTTCTTCATCCATATCAATCCAAAACCAAACAATTCCTATGCCTCTTGATAGTGATTCTCAATATTCAACCATACCAACACAAATCCCTTGTCAAGGATCTAGTATCAATGAACTAGCAGGTCCTAATCATTTGGATCAACATGAGCAGAACTCTGATTCTGAGCACAACAATGGTTCATGCATCTCATTTTCTGAATCAGCAAATATCTCAAAAGTGCCTAACCTTTTGGGATACACAAGCAATCAATTTCATGGCTTAGGTGCTAATGACTTTAGCACTCTCACTTATGATGGCTATGATGTAAATAACAGTGCCTATGAGATGGGCACTTTCAACATGGCAACTACAATAAGTGATTGCCAAATGCTAGATAGCAATTGGGTAAACAAAGACCTTGCATGTAGAACATGGAACATGGATGAATTATGGCAACATAGTCATTTACAAAAATAA 939 0.3685 MSTLKRLRKSSSEDDNELRRGPWTLEEDNLLVQYIADHDEGRWNLLAKRSVSHHFSEPGLKRTGKSCRLRWLNYLKPDLKRGNLTLEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDCTKFQDLVRHFWIPKLLQKSKETFSSSISIQNQTIPMPLDSDSQYSTIPTQIPCQGSSINELAGPNHLDQHEQNSDSEHNNGSCISFSESANISKVPNLLGYTSNQFHGLGANDFSTLTYDGYDVNNSAYEMGTFNMATTISDCQMLDSNWVNKDLACRTWNMDELWQHSHLQK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1010 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Lal16g1010 312 SUPERFAMILY Homeodomain-like 18 122 IPR009057 -
Lal16g1010 312 MobiDBLite consensus disorder prediction 197 220 - -
Lal16g1010 312 ProSiteProfiles Myb-like domain profile. 15 75 IPR001005 -
Lal16g1010 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 306 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal16g1010 312 Gene3D - 20 80 - -
Lal16g1010 312 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Lal16g1010 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Lal16g1010 312 SMART sant 80 128 IPR001005 -
Lal16g1010 312 SMART sant 19 77 IPR001005 -
Lal16g1010 312 Gene3D - 85 127 - -
Lal16g1010 312 CDD SANT 101 124 IPR001005 -
Lal16g1010 312 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Lal16g1010 312 Pfam Myb-like DNA-binding domain 20 75 IPR001005 -
Lal16g1010 312 CDD SANT 22 75 IPR001005 -
Lal16g1010 312 PANTHER OS01G0128000 PROTEIN 9 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1010 Lal-Chr16 6718001 6719884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1010 15 306 MYB Transcription Factor Family AT1G68320 44.108 5.46e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g1010 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1010 K09422 - gmx:778045 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1010 16 6718001 6719884 Lal16g1010 16 6718001 6719884 ECH
Lal16g1010 16 6718001 6719884 Lal23g0640 23 9135162 9137027 LSH