Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1004 ATGGCGACGCCGTTCACCGGACACTTGGACGGAGGAGGAGGACTGGCGGTGTTATCGAACTCCGTCAATAAGGTTGATTCTTCATCCTCCGTGCTCAATGGCGGCGGCGCCGACTTGAAGAAGTGCGCTCAATTGGATTCGCCGATTTTGATTTTCTTGTTCTTTCACAAAGCTATTCGGAATGAGCTCGACGCGCTTCACCGATTGGCCATGGCCTTCGCCACCGGTAACCGCTCTGACATTGACGCGCTCCGTGAGCGATACCATTTCCTCAGCTCGATTTATAGGCATCACTCCAATGCGGAAGACGAGGTAATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAAACATATTCTCTTGAACACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCCACCGATAATGGTGATAGTTTCCTGAGAGAGTTAGCATCATGCACGGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTGTTGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGTAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATCCCCCCTGATGAAAGTCAGGATCTGCAAAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAGAAGGTTATTTTCAGCTGGATGGAAGGGAGAAGTAGTGTCAAGTCGGTTGAAAGTCATGTAGACCATTCTCAAGTTCGAAGTAATTCTAGCTCGTTAACCCATCAGGTTGAAAAAGTAAACTGTTCATGTGAGTCTACCACAACAGGGAAAAGAAAATATTGTGGATCTAGGGTAGATGTTTCTGATACCACAGGAACACATCCTATAGATGAAATATTGCTCTGGCACAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAATGATACAACACTCTGGAGATTTTACTAATCTATCAGCTTTTAATGAAAGATTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAATAGATGGAGAACTTTCTTTCCTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTCTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTTTATTCTAAGTTATGCTCAATGGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAGTGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAACGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTCAAATTGATCGAGCGTGTCCTGCCATGGTTGATAGGATCATTAACTGAAGATGAGGCAAAGATGTTTCTGAGGAACATGCAATTAGCAGCTCCAGCTACGGATTCTGCTCTAGTCACACTCTTTTGTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTCCTGATATTGAAGAAAATATTGTTCAACCATCATGTTCTTGTGCTGCATCATCTGGCAGAGATTGCTCAGAATTATCTGGATCAGATGGGAACAAAAGATCCGTCAAGAGAAATATATTAAAATTGGACAAGAGCGGAGATTTACCTGAAACTTCGGAGACTGAAACTATCCAGAAGCAATGCTGTAGTGCTCGCTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAACAATTTTGGGCTGAGTTCTCTTTCTACAGCTAAGTCGTTGCGCTCCTTGTCTTTCAGCTCTTCTGCCCTATCTCTTAATTCCAGTCTTTTTGCATGGGAAACAGAGAGCATCTCATTTGATGCTGGCTCTGCACAAAGGCCAATCGATACCATATTTAAATTCCATAAAGCTATACGCAAGGACTTGGAGTATCTAGATGTTGAGTCTGGAAAGCTTAGTGATGGTGATGATACAACCCTTAGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCTGCATTGGAGTCTAAAGAGGCACTCCACAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAAGATATTTCCCATGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCCTTGCATACCCATATGTCAGAGGATTTACGTGAAGGTAATCTTGGAACTTCTGATACAAATGGTAGTGATATTATAAAAAATTATAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCCATAAGAGTGTCCCTGGACCAGCATATTTTCAGGGAAGAGAGCGAACTCTGGCCACTGTTTGGGAGACATTTCACCGTGGAAGAACAAGACAAGATAGTAGGCCGGATAATTGGAACTACGGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACTTCTGCACTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAGCTAAGAATACTATGTTTAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTACTTCACAGACAGAAACATCAGATCATGGCACTACTCGAAGAGGTGCTGAACATCAAGAAAGCTTGGATCCCAATGATCAGATGTTCAAACCCGGTTGGAAAGACATATTCCGGATGAATCAGAACGAACTTGAGTCAGAGATCCGAAAGGTTTATCGGGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAGAAATTACCTAGAAACCTCCCAGAAGAGTCATCTAATGGTGAAAAAATAGAAGGACAGTCACCATCATTTCGGGACCCAGGGAAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCTAGCTGCATGTTGTGGGAAGTTATTTACTTGCAGATTTTGTCATGACAACGTGAGCGATCACTCTATGGATAGAAAAGCAACATCAGATATGATGTGTATGCGCTGCCTGAATATACAGCCAGTAGGGCCTATATGCATGACTCCCTCGTGTAATGGACTCTCAATGGCGAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCACTGTCCATTTTGCAATTTATGTCGTGTTGGGCGAGGGCTTGGGATAGATTATTTTCATTGCATGAAATGCAACTGTTGCTTGGGGATAAAATCAGCAACCCACAAATGCCTCGAGAAAGGTTTAGAAATGAACTGCCCGATTTGCTGTGATGATTTATTCACATCAAGTGCTACCGTCAGAGCTCTACCCTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGAATGCTTGATGCCTTATTGGCCGCTGAGGAGCTTCCTGAAGAGTATAGGGATCACAATCAGGACATACTCTGTCATGACTGTGGTCGGAAGGGCATTTCATGCTTCCATTGGTTATATCACAAATGTGGATTTTGCGGCTCGTACAATACCCGAGTGATCAAGCCCGAAACATCAAATCCCAGCTGCACTTAG 3735 0.4228 MATPFTGHLDGGGGLAVLSNSVNKVDSSSSVLNGGGADLKKCAQLDSPILIFLFFHKAIRNELDALHRLAMAFATGNRSDIDALRERYHFLSSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSTDNGDSFLRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSIPPDESQDLQNCLIKIVPEEKLLQKVIFSWMEGRSSVKSVESHVDHSQVRSNSSSLTHQVEKVNCSCESTTTGKRKYCGSRVDVSDTTGTHPIDEILLWHNAIKKELSEIAVETRMIQHSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAIDGELSFLQEHAEEESQFNDFRSLIEGIQSEGATSNSEVEFYSKLCSMADHIMETIQRHFHSEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLIGSLTEDEAKMFLRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLPDIEENIVQPSCSCAASSGRDCSELSGSDGNKRSVKRNILKLDKSGDLPETSETETIQKQCCSARSCCVPGLGVSSNNFGLSSLSTAKSLRSLSFSSSALSLNSSLFAWETESISFDAGSAQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDDTTLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISHVLSELSVLHEALHTHMSEDLREGNLGTSDTNGSDIIKNYNELATKLQGMCKSIRVSLDQHIFREESELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQAAKNTMFNEWLSECWKESPVSTSQTETSDHGTTRRGAEHQESLDPNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPRNLPEESSNGEKIEGQSPSFRDPGKHVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSDMMCMRCLNIQPVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSATHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDHNQDILCHDCGRKGISCFHWLYHKCGFCGSYNTRVIKPETSNPSCT 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1004 1244 PANTHER CHY ZINC FINGER PROTEIN 36 1243 - -
Lal16g1004 1244 SMART ring_2 1128 1169 IPR001841 -
Lal16g1004 1244 MobiDBLite consensus disorder prediction 897 911 - -
Lal16g1004 1244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1123 1172 IPR013083 -
Lal16g1004 1244 CDD Hr-like 51 177 - -
Lal16g1004 1244 Pfam Hemerythrin HHE cation binding domain 653 815 IPR012312 -
Lal16g1004 1244 Pfam Hemerythrin HHE cation binding domain 305 439 IPR012312 -
Lal16g1004 1244 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Lal16g1004 1244 Pfam CHY zinc finger 999 1074 IPR008913 GO:0008270
Lal16g1004 1244 Gene3D - 1198 1239 - -
Lal16g1004 1244 SUPERFAMILY CHY zinc finger-like 994 1055 IPR037274 GO:0008270
Lal16g1004 1244 Gene3D nmb1532 protein domain like 648 890 - -
Lal16g1004 1244 ProSiteProfiles Zinc finger CHY-type profile. 992 1061 IPR008913 GO:0008270
Lal16g1004 1244 ProSiteProfiles Zinc finger RING-type profile. 1128 1170 IPR001841 -
Lal16g1004 1244 ProSiteProfiles Zinc finger CTCHY-type profile. 1064 1127 IPR017921 -
Lal16g1004 1244 Gene3D nmb1532 protein domain like 307 455 - -
Lal16g1004 1244 Gene3D nmb1532 protein domain like 44 197 - -
Lal16g1004 1244 Pfam Zinc-ribbon 1175 1232 IPR039512 -
Lal16g1004 1244 SUPERFAMILY RING/U-box 1125 1180 - -
Lal16g1004 1244 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 1243 - -
Lal16g1004 1244 CDD Hr-like 308 437 - -
Lal16g1004 1244 CDD RING-H2_Pirh2 1127 1170 - -
Lal16g1004 1244 Pfam Ring finger domain 1127 1169 IPR001841 -
Lal16g1004 1244 SUPERFAMILY Zinc hairpin stack 1065 1121 IPR037275 -
Lal16g1004 1244 MobiDBLite consensus disorder prediction 884 914 - -
Lal16g1004 1244 CDD Hr-like 655 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1004 Lal-Chr16 6675049 6686687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1004 1 1244 C2H2 Transcription Factor Family AT3G18290 66.244 0.0 1677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1004 K16276 - gmx:100801725 2169.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1004 16 6675049 6686687 Lal16g1004 16 6675049 6686687 ECH
Lal16g1004 16 6675049 6686687 Lal10g0974 10 17019905 17029145 PCT
Lal10g0974 10 17019905 17029145 Lal16g1004 16 6675049 6686687 PCT