Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0981 ATGGCTGAACGTGGCGGTGACCGTGGAGGATTCGGCCGAGGCTTCGGCGACAGAGGCCGTGGAGGTCGCGGTGACAGAGGCCGTGGTGGCCGACGCCGTGGTCCCCGTCGTGAAGAAGAGGAAAAGTGGGTCCCAGTCACCAAACTTGGCCGTCTCGTAAAAGATGGCAAAATCCGTTCCCTTGAACAGATCTACCTCCACTCACTCCCAATCAAGGAGCACCAAATCATTGACACCTTAGTGGGTCCCTCTCTCAAAGATGAGGTCATGAAAATTATGCCGGTTCAGAAACAAACCCGTGCTGGTCAGCGAACCCGGTTCAAGGCTTTTGTTGTTGTTGGTGATAACAATGGTCACGTTGGACTCGGTGTTAAGTGCAGTAAGGAGGTTGCAACCGCTATTCGTGGTGCGATTATTCTCGCTAAGCTTTCGGTTATTCCGGTTAGGAGAGGGTATTGGGGAAACAAGATTGGGAAGCCTCACACTGTTCCGTGTAAGGTTACTGGGAAGTGTGGTTCCGTTACTGTTAGGATGGTTCCAGCACCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAAAAGGTGCTTCAGTTTGCTGGGATTGATGATGTTTTTACTTCATCTAGGGGATCTACCAAAACTCTTGGAAATTTCGTCAAGGCCACATTTGACTGTCTGCTGAAAACCTATGGTTTCTTAACACCCGAGTTCTGGAAGGAGACTCGCTTCTCCAAATCTCCATTCCAAGAGTACACAGATCTATTGGCAAGGCCTACAACAAAGGCTCTGATCCTAGAAGAGGAAAAGGTGCCCGCTGATGTTTGA 828 0.5 MAERGGDRGGFGRGFGDRGRGGRGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLARPTTKALILEEEKVPADV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0981 275 ProSiteProfiles S5 double stranded RNA-binding domain profile. 85 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal16g0981 275 Pfam Ribosomal protein S5, N-terminal domain 85 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal16g0981 275 PANTHER RIBOSOMAL S SUBUNIT 1 271 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal16g0981 275 MobiDBLite consensus disorder prediction 1 24 - -
Lal16g0981 275 MobiDBLite consensus disorder prediction 1 41 - -
Lal16g0981 275 ProSitePatterns Ribosomal protein S5 signature. 102 134 IPR018192 -
Lal16g0981 275 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 271 - -
Lal16g0981 275 Gene3D - 42 147 - -
Lal16g0981 275 Gene3D - 148 241 IPR014721 -
Lal16g0981 275 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 241 IPR020568 -
Lal16g0981 275 Pfam Ribosomal protein S5, C-terminal domain 169 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lal16g0981 275 SUPERFAMILY dsRNA-binding domain-like 81 150 - -
Lal16g0981 275 TIGRFAM uS5_euk_arch: ribosomal protein uS5 38 245 IPR005711 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0981 Lal-Chr16 6522262 6530592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0981 39 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.308 4.01e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0981 K02981 - gmx:100820352 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0981 16 6522262 6530592 Lal15g0958 15 7471230 7473096 LSH
Lal16g0981 16 6522262 6530592 Lal23g0660 23 9316574 9318440 LSH