Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0980 ATGCCAAGTGTGACATGGGGTGTGATTCAAGGACGAAAAGAGAAACTCGTGTCGCGCGTGATCGTTTTCGATTACCTCAAGGGTTTAGGAATAATCCCTGATGAACTTCAAGACCTAGAGCTTCCTTCAACCGTTGAAGTGATGAGAGAGCGCGTTGAGTTTCTCATGAAATTAGGGTTAACAGTTGATGACATCAATGAATACCCTTTGATGTTAGGATGCAGTGTAAGAAAAAACATAATCCCAGTTTTGGGGTACTTAGAAAAAATTGGGATTCCAAGATCCAAACTTGGTGAGTTTATAAATAGTTACCCTCAAGTGCTGCATGCTAGTGTGATTGTTGAGCTTGTTCCTGTTGTTAGATTCCTTAGGGGACTAGATGTTGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAACTTTTAGGGTTCAAGCTTGAAGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGCATTGGTGTTAATCCTAGAGATATTGGTCCAATGGTGACTCAATATCCTTATTTATTAGGTATGAGAGTTGGGACTGTGATAAAGCCTATGATTGATTACCTGGTTAGTTTGGGGTTGCCGAAGAAGATTTTAGCTAGGATGTTGGAGAAGAGAGCTTATATACTTGGTTATGATCTTGAAGAGACTGTGAAACCAAATGTGGATTGTTTGATTAGTTTTGGTGTGAGGAGGGAATGTTTGGCTTCAGTTATTGCTCAATATCCTCAGATTGTTGGGCTGCCGCTTAAGGCGAAGTTGTCTTCGCAGCAGTACTTTTTTAGTTTGAAGCTTAAGATCGACCCTGAAGGGTTTGCACGAGTGATGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAGCCGGTTGAGTTCCTTATTGGAAGGGGGATACCAGCTAGCGACGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTTGTAGCGGTGCGAGTTGAGCTGATGAAGATAAGTTATTACTTTTTCAAAAGTGAAATAGGTAGACCGATGAATGAGCTAGTGGAGTTCCCGGAGTACTTTACTTATAGTTTGGAATCGAGGATCAAACCCAGATACCAACGGCTAAAAAGCAAGGGGATAAGGTGTTCATTAAACTGGATGCTGAATTGCAGTGACCAGAGATTTGAAGAGAGATTACAGGGTAATTACATTGAAACAGAAAGTGTAGGTCCTTCATTCTTTATGGGTGGGAAGTTAGATCTACCAGGTAATGCTATAGTGTCTGATGATGAAGAGGAGAGTGATGATGAAGTTTTATACAGACGAACTGTTTCTCTGTAG 1329 0.4108 MPSVTWGVIQGRKEKLVSRVIVFDYLKGLGIIPDELQDLELPSTVEVMRERVEFLMKLGLTVDDINEYPLMLGCSVRKNIIPVLGYLEKIGIPRSKLGEFINSYPQVLHASVIVELVPVVRFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVSLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGVRRECLASVIAQYPQIVGLPLKAKLSSQQYFFSLKLKIDPEGFARVMEKMPQVVSLHQNVIMKPVEFLIGRGIPASDVASMVIKCPQFVAVRVELMKISYYFFKSEIGRPMNELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESVGPSFFMGGKLDLPGNAIVSDDEEESDDEVLYRRTVSL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0980 442 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 279 309 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 Pfam mTERF 84 392 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 PANTHER EXPRESSED PROTEIN 2 425 - -
Lal16g0980 442 PANTHER CGI-12 PROTEIN-RELATED 2 425 IPR003690 GO:0003690|GO:0006355
Lal16g0980 442 Gene3D Transcription termination factor 3, mitochondrial 47 188 IPR038538 -
Lal16g0980 442 Gene3D Transcription termination factor 3, mitochondrial 189 402 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0980 Lal-Chr16 6520294 6521622 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal16g0980 mTERF 2.4e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0980 K15032 - gmx:100809590 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0980 16 6520294 6521622 Lal15g0956 15 7454076 7455401 LSH
Lal16g0980 16 6520294 6521622 Lal8g0452 8 3011686 3013931 PCT
Lal16g0980 16 6520294 6521622 Lal10g0965 10 16946415 16948631 PCT