Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0979 ATGTCTCAAATAGTTTTCGATTTTGATGGAGAAATAAGTTATTATGAGTTAGTTATGAATTACAAAGAGTGTAAACACAATCATGGTGTGCATTATGGTTTTGTTCTTCTTGATGGTTGCGTCGAGTTTATAAGTGGAGGTCGACGAAATGAAGATGATGAAGTTGGAGATGCTTTGATTTGTGCTAACTGCAACTGTCACCGCAACTTTCACCGAAGAGAAGTCACAATTAGACCAATACCTCAACCTCGTGAACCTCACAACAACAGTCAATAA 276 0.3732 MSQIVFDFDGEISYYELVMNYKECKHNHGVHYGFVLLDGCVEFISGGRRNEDDEVGDALICANCNCHRNFHRREVTIRPIPQPREPHNNSQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0979 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 81 - -
Lal16g0979 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 81 - -
Lal16g0979 91 Pfam ZF-HD protein dimerisation region 19 75 IPR006456 -
Lal16g0979 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 75 IPR006456 -
Lal16g0979 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0979 Lal-Chr16 6516798 6517252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0979 21 75 ZF-HD Transcription Factor Family AT3G50890 52.727 7.54e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal16g0979 ZF-HD_dimer 6.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0979 - - lang:109357419 70.8626