Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0965 ATGGGGAAGAAGAAGAAGCGTGTTTCTTCGAAGGTGTGGTGTTATTACTGCGACCGCGAATTCGACGATGAGAAGATATTGGTTCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGCGGCATGACCATCCATGTCCTCCAGGTTCACAAGGAATCTGTTACCAAAGTGCCCAATGCAAAACCTGAGAGGGAATCCACCGATATTGAAATATATGGAATGCAAGGGATCCCGCCAGATGTCTTGGCTGCTCATTATGGAGAGGAAGATGACGAGGTTCCATCAAAGGCAGCCAAGATTGATATCCCATCAACCCCGTTTATAGGTGGAATGGTGCCTCCTCCTCTAGGTTCAGGTTATCCTCCTCGGCCACCTTTTGGCACAGTGCCACGAATTTACAATCCAGCTTTACCTGTGCCTCCGAATGGTTGGGCGGTTCCGCCTCGACCTCAGTCATGGTATCCACAACCTCCATCCATTTCTGTTCCTCCTCTTGCCCCATACCCACAGCAGCCATTATTTCCTGTGCAGAATGTGAGACCACCATTGCCAGCAACTGCTCCTCCTGCACCCCAAACTCAGGTTGCCCCACCTGGATTGTCTACATCTACAACTTCTATCCCAGTTTCACAACCTTTGTTTCCTGTTATTGGTAATAACAATACAACTCAAAGTTCAACACTTCCTTTTGCCCCTCTAGCTTCAAGTGTTCCCTCAATAACACCTGTGCAATTGTCTACAAATGTTCCTTTTGATGTACATGCGAGTGCCATCTCTTCTTTGACAAATAGTTATCAGGCTGTAGGGGTTCCAGGTGGGCCAACAAGTAACTCTCATTCTTATTCTTCTGGTCCAAATACTGGTGGTCCTTCAATCGGGCCTCCTCCGGTAATTGCAAATAAAGCTCCTGTTTCTCAGCCTGCCACTAATGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAACGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAATAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCAGGTCGAATGGCATTTTAG 1122 0.4733 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMTIHVLQVHKESVTKVPNAKPERESTDIEIYGMQGIPPDVLAAHYGEEDDEVPSKAAKIDIPSTPFIGGMVPPPLGSGYPPRPPFGTVPRIYNPALPVPPNGWAVPPRPQSWYPQPPSISVPPLAPYPQQPLFPVQNVRPPLPATAPPAPQTQVAPPGLSTSTTSIPVSQPLFPVIGNNNTTQSSTLPFAPLASSVPSITPVQLSTNVPFDVHASAISSLTNSYQAVGVPGGPTSNSHSYSSGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDENSQMSSIDAAIDKRILESRLAGRMAF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0965 373 MobiDBLite consensus disorder prediction 278 297 - -
Lal16g0965 373 MobiDBLite consensus disorder prediction 278 313 - -
Lal16g0965 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lal16g0965 373 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 373 - -
Lal16g0965 373 SMART c2h2final6 12 35 IPR013087 -
Lal16g0965 373 SMART c2h2final6 36 59 IPR013087 -
Lal16g0965 373 Gene3D Classic Zinc Finger 1 66 - -
Lal16g0965 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lal16g0965 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - -
Lal16g0965 373 MobiDBLite consensus disorder prediction 192 212 - -
Lal16g0965 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0965 Lal-Chr16 6405108 6409310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0965 1 353 C2H2 Transcription Factor Family AT1G30970 63.187 1.72e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0965 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0965 - - gmx:100819009 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0965 16 6405108 6409310 Lal23g0677 23 9424424 9427876 LSH