Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0958 ATGGATATTGAGGAGGAGATCCGTTCTTTACAGCTTGACTCAGCAGAAGAAAATAACACGGTTGTAATTCTGGAGGATGGAAAGCCAGAAGTTGATAAATCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAACCACAGTCTGTTCAGGCTGAAGAGCCAAAAGATAAGGAAATTTCTACTGTGCAAGATGAAAAAGATGATCTGGAAATGAAGAAAAGACACATAAATGTTGTATTCATTGGTCATGTCGATGCTGGTAAGTCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACTATCCAAAAATATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAACGAGGAGGAGAGGGTAAAGGGGAAAACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACTATTTTGGATGCCCCTGGTCACAAAAGCTATGTTCCTAACATGATCAGCGGTGCATCTCAAGCTGATATCGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAATTTGAGACTGGATATGAGAAAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGATCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGGTGGTTCCATTTCTGAAGCAATCAGGATACAATGTGAAGAAAGATGTCGTGTTTTTACCAATATCTGGATTGAATGGTGCAAACCTACAAACGAGAGTGGATAAAAGCATTTGTCCATGGTGGGGTGGTCCTTGCTTATTTGAAGCCCTCGATTCTGTTGAACTTCCAACACGAGATCCCAAAGCTGCTTTCAGGATGCCTATAATGGACAAGTTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAAGGGGATTCTCTGTTGGTGATGCCAAATAAGCATCACGTAAAAGTTGTTGCTATATATATTGATGAAGATCGGGTTAAATGTGCTGGACCTGGAGAAAACTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTGTCTGGGTTTGTCCTGTCTTGTGTTGAAAGCCCAATACCAGCTGTTACCGAGTTTGTTGCCCAGCTGCAGATCCTTGAATTGGTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATTCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTTTTACATCAAATTGATCCAAGGACAAGGAAACCTATAAAAAAGAAAGTTCTCTTTGTGAAGAGTGGTGCTGGTGTTGTGTGCCGTGTTCAGGTTAACAACACAATATGTATTGAGACGTTCTCTAGTTTTCCACAACTCGGGAGGTTTACTCTTCGCACTGAAGGGAAAACTATTGCAGTGGGAAAAGTTACTGGTCTGTGA 1503 0.4145 MDIEEEIRSLQLDSAEENNTVVILEDGKPEVDKSDKMDEDPKQEVQPQSVQAEEPKDKEISTVQDEKDDLEMKKRHINVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVQWSKERYDEIESKVVPFLKQSGYNVKKDVVFLPISGLNGANLQTRVDKSICPWWGGPCLFEALDSVELPTRDPKAAFRMPIMDKFKDMGTVVMGKVESGTVREGDSLLVMPNKHHVKVVAIYIDEDRVKCAGPGENLRIRLSGVEEEDILSGFVLSCVESPIPAVTEFVAQLQILELVDNAIFTAGYKAVLHIHSVVEECEIVELLHQIDPRTRKPIKKKVLFVKSGAGVVCRVQVNNTICIETFSSFPQLGRFTLRTEGKTIAVGKVTGL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0958 500 SUPERFAMILY Translation proteins 297 390 IPR009000 -
Lal16g0958 500 Pfam Elongation factor Tu GTP binding domain 74 280 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 PANTHER BNAA06G12300D PROTEIN 64 495 - -
Lal16g0958 500 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 394 499 IPR009001 -
Lal16g0958 500 CDD EF1_alpha 78 298 - -
Lal16g0958 500 Gene3D Translation factors 393 500 - -
Lal16g0958 500 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 MobiDBLite consensus disorder prediction 26 43 - -
Lal16g0958 500 PANTHER TRANSLATION FACTOR 64 495 - -
Lal16g0958 500 MobiDBLite consensus disorder prediction 1 65 - -
Lal16g0958 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 309 IPR027417 -
Lal16g0958 500 CDD eRF3_II 306 384 - -
Lal16g0958 500 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 303 IPR000795 GO:0003924|GO:0005525
Lal16g0958 500 CDD eRF3_C_III 392 500 - -
Lal16g0958 500 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Lal16g0958 500 MobiDBLite consensus disorder prediction 51 65 - -
Lal16g0958 500 Pfam Elongation factor Tu C-terminal domain 391 499 IPR004160 -
Lal16g0958 500 Pfam Elongation factor Tu domain 2 318 384 IPR004161 GO:0005525
Lal16g0958 500 Gene3D - 54 298 IPR027417 -
Lal16g0958 500 Gene3D Translation factors 303 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0958 Lal-Chr16 6360785 6369693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0958 74 495 Eukaryotic Initiation Factors Gene Family AT5G60390 38.353 9.46e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0958 K03267 - gmx:100784412 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0958 16 6360785 6369693 Lal16g0958 16 6360785 6369693 ECH
Lal16g0958 16 6360785 6369693 Lal15g0927 15 7108311 7116695 LSH
Lal16g0958 16 6360785 6369693 Lal23g0685 23 9534327 9544340 LSH