Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0953 ATGAGTCATGAGCTGGCAGAGACGTATGCTTGCATGCCCACCACCGAGCGCGGCCGTGGGATTCTCATATCCGGCGACTCCAAATCAAACTCCATACTCTACACCAACTCCAGATCCGTCGTCATCATGAATCTCCTAAACCCGCTTCAAGTTTCCGTTTACGGGGATCATGCTTACCCTGTCACCGTTGCAAGATTCTCCCCTAACGGCGAATGGATTGCATCTGCTGACGTGTCAGGGACCGTCAGGATCTGGGGGACTCGAAACGACTTCGTTTTGAAGAAGGAGTTTCGGGTCCTGTCGGGTCGGATCGATGATTTGCAATGGTCCCCTGATGGACTCAGAATCGTCGCTTGCGGTGATGGCAAAGGCAAATCCCTTGTTCGTGCTTTCATGTGGGATTCTGGAACTAATGTTGGTGAGTTTGATGGCCATTCGAGGCGGGTTTTAAGTTGTGCATATAAACCAACAAGACCTTTTCGTATTGTCACATGTGGAGAAGATTTTCTGGTGAACTTTTATGAAGGACCACCATTTAGATTCAAGTCATCTCACAGCGTTCACTGCAACCGCAATATTGCGGCAGCATCACGCGATGCGGTCCGCAATTTGAAACATTGGATGCTGGATCATTCAAATTTTGTCAATTGTGTAAGATATTCTCCAGATGGTAGTAAATTTATTAGTGTAAGTTCTGACAAAAAGGGTATCATATTCGATGGAAAGAGTGGGGAGAAGATCGGTGAGTTGTCCTCTGAAGGTGCCCATACTGGCAGTATTTATGCTGTTAGCTGGAGTCCAGATGGAAAACAACTTCTGACTGTATCTGCTGACAAGTCTGCAAAAGTATGGGACATATCTGAGGACAATAATGGAAAAGTTAAGAAAACATTGACTTCTCCTGGCTCTGGTGGAGTTGAAGACATGTTAGTGGGGTGCCTGTGGTTGAATGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATTTCTATATTTTTAGCAAGTGATCTTGATAAAGCCCCGACAATGTTTTCTGGACATATGAAAAATGTTTCCTCCTTAACTATTCTTAGAAGTAACCCTAGAGTGCTCTTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGTAAATTACAAAGGAAGGACAATTCACAAATCAAATGCTTAGCAGCTGCAGAAGAAGAGATTGTTACATCTGGATTCGATAATAAGATATGGCGAGTTTCTTTACATGGGGATCAGTGCGGTGATGCTGAAGCTATTGATATAGGAAATCAACCAAAGGACCTGAGTGTTGCACTTCTATCTCCCGAATTTGCTCTTGTTTCAATTGATTCGGGAGTTGTCATGTTGCGTGGTACAAAAGTTGTGTCTACCATTAATCTTGGGTTTGCCGTGACAGCATCTGCTGTCTCTCCTGATGGAAGTGAAGCCATTATTGGTGGACAGGATGGTAAATTGCACATATATTCTATTTCCGGTGATACACTTGTAGAAGAGACAGTTCTTGAGAAACACCGTGGTGCTATTACTGCCATACATTATTCTCCAGATGTTTCAATGTTTGCATCAGGGGATGCCAATCGAGAAGTTATAGTGTGGGATCATGCCTCCTGGGAGGTGAAGCTTAAGAACATGTTGTACCATACTGCTCGGGTAAACAGCCTTGCTTGGTCTCCTGATAGCCGTAGAATTTCTACAGGATCACTTGACACATGTGTCATCATATATGAAATTGACCAGCCTGTATCTAGTAGAATTACCATAAAGGGTGCTCACCTAGGTGGGGTTTATGGTTTAACATTCACCGATGAGTATACCTTGGTTAGCTCTGGCGAAGATGCTTTTATCCGTGTTTGGAGGATAACCCCTCCATGA 1902 0.438 MSHELAETYACMPTTERGRGILISGDSKSNSILYTNSRSVVIMNLLNPLQVSVYGDHAYPVTVARFSPNGEWIASADVSGTVRIWGTRNDFVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRIVTCGEDFLVNFYEGPPFRFKSSHSVHCNRNIAAASRDAVRNLKHWMLDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGKSGEKIGELSSEGAHTGSIYAVSWSPDGKQLLTVSADKSAKVWDISEDNNGKVKKTLTSPGSGGVEDMLVGCLWLNDYLVTVSLGGTISIFLASDLDKAPTMFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGKLQRKDNSQIKCLAAAEEEIVTSGFDNKIWRVSLHGDQCGDAEAIDIGNQPKDLSVALLSPEFALVSIDSGVVMLRGTKVVSTINLGFAVTASAVSPDGSEAIIGGQDGKLHIYSISGDTLVEETVLEKHRGAITAIHYSPDVSMFASGDANREVIVWDHASWEVKLKNMLYHTARVNSLAWSPDSRRISTGSLDTCVIIYEIDQPVSSRITIKGAHLGGVYGLTFTDEYTLVSSGEDAFIRVWRITPP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0953 633 CDD WD40 57 373 - -
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 633 - -
Lal16g0953 633 SUPERFAMILY WD40 repeat-like 208 627 IPR036322 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 588 - -
Lal16g0953 633 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 632 - -
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 588 IPR001680 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Lal16g0953 633 Gene3D - 8 630 IPR015943 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 543 IPR001680 GO:0005515
Lal16g0953 633 Pfam WD domain, G-beta repeat 510 543 IPR001680 GO:0005515
Lal16g0953 633 Pfam WD domain, G-beta repeat 52 85 IPR001680 GO:0005515
Lal16g0953 633 Pfam WD domain, G-beta repeat 210 235 IPR001680 GO:0005515
Lal16g0953 633 Pfam WD domain, G-beta repeat 251 285 IPR001680 GO:0005515
Lal16g0953 633 Pfam WD domain, G-beta repeat 557 585 IPR001680 GO:0005515
Lal16g0953 633 Gene3D - 12 361 IPR015943 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 543 - -
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 633 IPR001680 GO:0005515
Lal16g0953 633 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Lal16g0953 633 SUPERFAMILY WD40 repeat-like 28 332 IPR036322 GO:0005515
Lal16g0953 633 SMART WD40_4 590 629 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 337 377 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 90 134 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 135 175 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 548 586 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 291 333 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 47 86 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 504 543 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 461 499 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 243 285 IPR001680 GO:0005515
Lal16g0953 633 SMART WD40_4 201 240 IPR001680 GO:0005515
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 287 - -
Lal16g0953 633 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 632 - -
Lal16g0953 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0953 Lal-Chr16 6328509 6334022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0953 208 533 Eukaryotic Initiation Factors Gene Family AT2G46290 22.535 1.18e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0953 K24736 - gmx:100794702 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0953 16 6328509 6334022 Lal16g0953 16 6328509 6334022 ECH