Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0950 ATGGCTCTTCCTCCTTCTTCTCCTCCTGCTTCCACCAACGTTGCTTTTCCCTTCGACAACAATAATTACATATATGACCCTGCCTCTGCCAACTTCAAGAATAACTCATTACCCAACAACCCTCCTGCTCTTCCTTCTCAACCACGCAACCACAACCACCCTTCTTATGCTGAGATGATTTATACGGCAATTGGGGCATTGAAAGAGAAGAACGGTTCAAGCAAGAGAGCGATATGCAAGTACATGGAACAAGTGTATAAGGACAATCTTCCACCCAATCACGATGCCTTATTGACTAAGAACCTCAAGAGCTTGAAGAAGAACGGCCATCTAGTCTTAGTCAAAAAATCCTACCATCTCCCACTTGGATCTATCCAACCGCATTCTGAGCCGGAGCAGGTTCAGCAAGTTGCTCAATCAGAGCACAAGGCTAATCCTAAACCAGCCCAGAATGCTAACACCAATGGTGGTGGTGGTGTGACTGAAGTGAAGAAAAGGGGTCGGGGTCGTCCACCTAGGGTCAGCAGTCTCAAGCCCCAAGCTAAGCCCGCTGATTCTGTTGTGAAGCCCAAGCCCAGAGGGAGGCCCAGGAAGAATGCTGCTGTTACAGCCTCGTCTGCTGCAGCTGGTGGCGCTAATAAGAAGCTTGCTGTGGCGGGGAAGAAGTCAATGAAGAAATCCAGTGCAAAGCCCGTGGGCCGCCCAGAGGAGGGATCAATTGATGCTGTTGAAGTGTCGAAAAAGGCCGAAATTAACGAAATAAAAAGGAAGATTCGACGTTTTCAATGGAAAATTGGAGAATCTGTTTCAGTATTAAGTACTTATTTTAACGGTGAGAGTCCTATCACAGCACGTGCAGCACTTCGTGAGCTTGAACATCTTGCAAATTTGAACATCGATTTGCCATTAACGGACGATGACCTTGCAGAACCGCAGCGTCCTCAGCAGCTACGATTCCCTACACAGATGCACGACATTTTCAACCCACCACATGCATAA 999 0.4755 MALPPSSPPASTNVAFPFDNNNYIYDPASANFKNNSLPNNPPALPSQPRNHNHPSYAEMIYTAIGALKEKNGSSKRAICKYMEQVYKDNLPPNHDALLTKNLKSLKKNGHLVLVKKSYHLPLGSIQPHSEPEQVQQVAQSEHKANPKPAQNANTNGGGGVTEVKKRGRGRPPRVSSLKPQAKPADSVVKPKPRGRPRKNAAVTASSAAAGGANKKLAVAGKKSMKKSSAKPVGRPEEGSIDAVEVSKKAEINEIKRKIRRFQWKIGESVSVLSTYFNGESPITARAALRELEHLANLNIDLPLTDDDLAEPQRPQQLRFPTQMHDIFNPPHA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0950 332 PANTHER HISTONE H1-LIKE 135 311 - -
Lal16g0950 332 PANTHER HISTONE H1-LIKE 41 174 - -
Lal16g0950 332 MobiDBLite consensus disorder prediction 123 239 - -
Lal16g0950 332 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 52 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g0950 332 Gene3D - 49 132 IPR036388 -
Lal16g0950 332 CDD H15 53 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g0950 332 SUPERFAMILY "Winged helix" DNA-binding domain 50 127 IPR036390 -
Lal16g0950 332 PANTHER HISTONE H1 41 174 - -
Lal16g0950 332 PANTHER HISTONE H1 135 311 - -
Lal16g0950 332 PRINTS AT-hook-like domain signature 165 175 IPR017956 GO:0003677
Lal16g0950 332 PRINTS AT-hook-like domain signature 188 199 IPR017956 GO:0003677
Lal16g0950 332 PRINTS AT-hook-like domain signature 227 237 IPR017956 GO:0003677
Lal16g0950 332 SMART h15plus2 50 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g0950 332 PRINTS Histone H5 signature 39 60 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal16g0950 332 PRINTS Histone H5 signature 66 83 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal16g0950 332 PRINTS Histone H5 signature 191 208 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal16g0950 332 PRINTS Histone H5 signature 213 232 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal16g0950 332 MobiDBLite consensus disorder prediction 128 158 - -
Lal16g0950 332 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Lal16g0950 332 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Lal16g0950 332 Pfam linker histone H1 and H5 family 53 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0950 Lal-Chr16 6302725 6304807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0950 59 121 Single Myb Histone (SMH) Gene Family AT1G49950 41.270 3.62e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0950 - - lang:109350909 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0950 16 6302725 6304807 Lal23g0692 23 9620610 9624661 LSH