Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0949 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGAAGATGCAGCAGCACAAGGGTCTACTACTTCGAGGGGAAACAAGTCCAATGATGGTTCATCTACTCCTAAGAAGATTTCAAATTGGTTGCATTCAGTTTCCAATAGGCAGAGTCAAAGTCCTCCATCTCCTGACTTGGCTATAGGAGAAAGAGGGGAACTATTTGATTCAGTGAGCAGTGGTGGCGGTGTTGGTTTGGATATAGTTTCTGATTCGATGAGGCACGATTCCGGGTCTAGCAGTTCAAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAATTGGCTTTGGAGATGAGTGCAAAAGAGGATCCCGAGGCTGTTCAGATTGAAGCTGTTAAGCAGATCAGTTTAGGATCTTGTGACCCGGATAATACACCAGCTGAGGTCGTGGCATACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGGTCTCGGATGGTTTCTATGACCTATATGGGATCTTAACTGAGTCAACATCTGCAAGAATGCCTTCCCTAGTAGATCTACAAGGAACGCCGACTTCAGATGGTGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCAGATTCCAATTTGTTGAAACTTGAGCGAAAAGCGCTAGAACTGGCAGACGAGCTAAGAACAGATTTTGAAGTAGCCATAGATAGTAATTTGGTGCACAAGATTGCAATATTAGTGGCTGACTATATGGGTGGACCTGTTGAAGATCCTGCAAGCATGACTAGAGCATGGCGGAGTCTTTGTTACAGTCTAAAAGCAACCCTTGGTAGCATGGTTTTGCCACTTGGTTCACTAACCATTGGATTGGCTCGACATCGTGCATTGTTATTCAAGGTATTAGCTGATAGTTTGGGCATCCCATGCCGGTTGGTGAAAGGACTGCAATATACTGGTTCAGATGATGTGGCAATGAACTTTGTCAGAATTGATGATGGAAGAGAGTACATTGTTGACCTAATGGCAGATCCTGGAACACTTATTCCAACTGATGCAACTGGGTCCCATATCGAGTATGATGAATCTTCATTTGTAGCCAGTCATTCATCAAGAGACTTTGATTCCTCTCATATAGCATCGTTCAGCAGCGGAGTTGGAAGTTTGTCTGAAGAAACTTCCGACTTCGGGACACTGGATAAAGGAATCAGATCAAAACATATTGCATACAGCGAGAAAGAATCTGAAGTAAGCAAACCTGCTACAGCTAAGGAAGAATTAAGGAAACCATCAAGTGAATTAAAAAATACTACCAATGCAGAGAAGATCAAAGTGGGTGAATCTCCTAGCAGACCTAATTATCCATATATGCATGGAAGATCTCCTTCTTGGACTGAAGGCATCAGTTCCCCAGCAGTACGTAGAATGAAAGTCAAAGATGTTTCACAATATATGATTGATGCTGCGAAGGAGAACCCGAACCTAGCTCAAAAACTTCACGATGTTTTACTCGAAAGTGGTGTTGTTGCTCCTGCAAACTTATTTTCTGAAATTTACCACTTAGGTTCATCACCCGAGACCAGTTTTCCAACTGAAGAAAAAGATGAATATAAACAGGGAAGTGTTCATCAAGAAACTAAGGCTTTATTTTTGCCTCCTTTGCCTCACCCCAGACTTCATCCCAAAGCAAGTCCAAGCAGTCAGGTGGAGCATCCTAAGCCTGTAGAAGGTTTAGGAATCGGCCTTCCTCTTGATGCAAGGGCAAGTTCTGGACAGCACATACCATCTCAGGAAGAAGCAACTCAGGTAAAATATGGGAAGAATGTTCCGGTTGCTGCTGCCGCAGCTGCTGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCTGTGACTAAGTCAAGCACTGAATCAAATATTGAGATTCCAGTAGCAGCAGCTGCTACAGCTGCAGCTGTTGTAGCAACTACTGCTGCTGTCAGTAAACAGTATGAGCAGGGCAGTCAGAGTGATGGAGATACGGATGGTGCTGGTTATGAGCCGAAGGGTGGTGGTGAAGGAGAGAATAGTGCTTTGGGAGCAAACTCAGAAGGCGAGAGAATATCTGATAGATCAGTAGGTAATGATAGCACAAGATCTGAATCCGCGCTAGATGATGTTGCTGAGTATGACATTCCATGGGAGGAAATCACATTGGGCGAGCGTATTGGACTTGGATCATATGGGGAAGTGTACCGAGGTGAACGACATGGAACTGAAGTTGCTGTAAAGAGGTTTCTTGATCAAGATTTCTATGGTGAATCACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTGTTCATGGGAGCTGTAACTCGACCGCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGGAGTTTATATAGATTAATTCACCGACCTAACAATCAATTAGATGTTCGAAGGCGATTGAGGATGGCCCTGGATGCTGCTCGAGGAATGAACTATTTGCACAATTGCACTCCAATGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTTTGTGATTTTGGTCTATCGCGAATGAAGAATAGTACATTTCTTTCTTCCAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAGCTTTCAGATGAAAAGTGTGATGTTTATAGCTATGGGGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATTCCAGATGATATAGACCCTGCTGTTGCAGATATTATCAGGCAATGCTGGCAGACAGATCCAAAGTTGAGACCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAAGCCAATTACTAGTTCTCAAGTGCCTAGACCAAGTGCTCAGTCATCAAGAGCTGCCGAAGATGCTGCAGGATAG 3018 0.4357 MKNILKKLHIMSNQSEDAAAQGSTTSRGNKSNDGSSTPKKISNWLHSVSNRQSQSPPSPDLAIGERGELFDSVSSGGGVGLDIVSDSMRHDSGSSSSRDPEVEEEYQIQLALEMSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKVSDGFYDLYGILTESTSARMPSLVDLQGTPTSDGVTWEAVLVNRAADSNLLKLERKALELADELRTDFEVAIDSNLVHKIAILVADYMGGPVEDPASMTRAWRSLCYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDDVAMNFVRIDDGREYIVDLMADPGTLIPTDATGSHIEYDESSFVASHSSRDFDSSHIASFSSGVGSLSEETSDFGTLDKGIRSKHIAYSEKESEVSKPATAKEELRKPSSELKNTTNAEKIKVGESPSRPNYPYMHGRSPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPANLFSEIYHLGSSPETSFPTEEKDEYKQGSVHQETKALFLPPLPHPRLHPKASPSSQVEHPKPVEGLGIGLPLDARASSGQHIPSQEEATQVKYGKNVPVAAAAAAAAVVASSMVVAVTKSSTESNIEIPVAAAATAAAVVATTAAVSKQYEQGSQSDGDTDGAGYEPKGGGEGENSALGANSEGERISDRSVGNDSTRSESALDDVAEYDIPWEEITLGERIGLGSYGEVYRGERHGTEVAVKRFLDQDFYGESLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDVRRRLRMALDAARGMNYLHNCTPMIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKNSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVYSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDIDPAVADIIRQCWQTDPKLRPTFAEIMAALKPLQKPITSSQVPRPSAQSSRAAEDAAG 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0949 1005 PRINTS Tyrosine kinase catalytic domain signature 799 812 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 PRINTS Tyrosine kinase catalytic domain signature 838 856 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 PRINTS Tyrosine kinase catalytic domain signature 885 895 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 PRINTS Tyrosine kinase catalytic domain signature 904 926 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 PRINTS Tyrosine kinase catalytic domain signature 948 970 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 Coils Coil 204 224 - -
Lal16g0949 1005 SUPERFAMILY Protein kinase-like (PK-like) 710 975 IPR011009 -
Lal16g0949 1005 Gene3D Transferase(Phosphotransferase) domain 1 804 988 - -
Lal16g0949 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Lal16g0949 1005 MobiDBLite consensus disorder prediction 8 59 - -
Lal16g0949 1005 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 995 - -
Lal16g0949 1005 MobiDBLite consensus disorder prediction 408 429 - -
Lal16g0949 1005 MobiDBLite consensus disorder prediction 408 459 - -
Lal16g0949 1005 Pfam Protein tyrosine and serine/threonine kinase 725 977 IPR001245 GO:0004672|GO:0006468
Lal16g0949 1005 Gene3D Phosphorylase Kinase; domain 1 718 802 - -
Lal16g0949 1005 Pfam Ethylene-responsive protein kinase Le-CTR1 143 346 - -
Lal16g0949 1005 MobiDBLite consensus disorder prediction 550 569 - -
Lal16g0949 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 995 - -
Lal16g0949 1005 ProSiteProfiles Protein kinase domain profile. 725 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0949 1005 MobiDBLite consensus disorder prediction 658 712 - -
Lal16g0949 1005 ProSitePatterns Protein kinases ATP-binding region signature. 731 752 IPR017441 GO:0005524
Lal16g0949 1005 MobiDBLite consensus disorder prediction 982 1005 - -
Lal16g0949 1005 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 103 122 IPR003903 -
Lal16g0949 1005 MobiDBLite consensus disorder prediction 81 104 - -
Lal16g0949 1005 SMART serkin_6 725 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0949 1005 CDD STKc_MAP3K-like 731 977 - -
Lal16g0949 1005 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0949 Lal-Chr16 6287444 6295900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0949 1 997 MAP Kinase Kinase Kinase AT1G73660 60.971 0.0 1143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lal16g0949 PK_Tyr_Ser-Thr 6.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0949 - - gmx:100778331 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0949 16 6287444 6295900 Lal16g0949 16 6287444 6295900 ECH
Lal16g0949 16 6287444 6295900 Lal23g0693 23 9631496 9640796 LSH