Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0941 ATGTGGATGGTGAGTTACAACGAAGGCAGTGACTTCAACTTGGCTGATTATGCATTCAATGGAAGAAAACTCAGGCCTCTCGTGCCAAGGCCAGTGACTTCTCCTAACAACACTTCTTCAGCTATAACTACTCCTTGCTTAACCCGTATTCATCATGGCAATGATTTCTTTTCACAATATCACAATATGGCATCAGTGGTAGAGCAGGGAAAGAGAGAGTTGAATGCTCCACCAGTTGTGGTGAGCTCAAGGTGGAATCCAACACCAGAACAGTTAAGAGCACTTGAAGAATTGTATATGAGAGGAACAAGAACACCATCTGCTGAACAAATCCAACAAATCACAGCACAACTAAGAAGGTTTGGCAAAATTGAAGGCAAAAATGTTTTCTATTGGTTTCAAAATCACAAAGCAAGAGAAAGACAGAAACGACGCCGTCAAATGGAATCTGCTGCTGAGGGTCATCACTTTGATACTACTCTTGAAAAGAAAGACTCAGATTATAGTTTGTATGATATGATTACATTGGAATATTGGATTATCTCATCTCTCATCTCATATATATTTAAGGCACAAGTAGGGCAGTGTGTGAAGTTGAACAAACCAAGAACTGGGTACCCTCTACAAACTGCAGTACCCTTGCAGAGAAGGATTGGACAAGTAACACAGGAATCTGTCTCAATACAAAGAGCAGAAGAGACAGCAAAAGCAGAAGTTTCAGAATGTAGAACAGAAGGATGGCTTCAGTTTGATGAAGGGGAATTAGAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACATGGCACATGATGATGCAATTACCTCCTCATCCTCCTACACTTGTTGCACCTTACCTCATAAAAACACCTCTTAATACTTCTACACATGTAACAGCAAGGTTAATGGACCCAACAAGGCTCATTAAGAATCATCATGACCTCAGCAGCTTCTTAATTTCACCTCACAGATCAGAATTAAGCATTAACAACACTGAAGATATTATTGACAACTGTGCTGTGGAATCTCAAACCCTTCAACTTTTCCCTATAAGGAATGGAGATTGCAGCAGTGATAACATTAACCAACAGAAAAAGACGGACATATCAATTTCAGCAATGAATGCTCCTCCTAGCCACTTTATTGAGTTCCTTCCATTGAAGAACTAA 1167 0.3993 MWMVSYNEGSDFNLADYAFNGRKLRPLVPRPVTSPNNTSSAITTPCLTRIHHGNDFFSQYHNMASVVEQGKRELNAPPVVVSSRWNPTPEQLRALEELYMRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHFDTTLEKKDSDYSLYDMITLEYWIISSLISYIFKAQVGQCVKLNKPRTGYPLQTAVPLQRRIGQVTQESVSIQRAEETAKAEVSECRTEGWLQFDEGELEQRRNFMERNATWHMMMQLPPHPPTLVAPYLIKTPLNTSTHVTARLMDPTRLIKNHHDLSSFLISPHRSELSINNTEDIIDNCAVESQTLQLFPIRNGDCSSDNINQQKKTDISISAMNAPPSHFIEFLPLKN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0941 388 Gene3D - 81 142 - -
Lal16g0941 388 ProSiteProfiles 'Homeobox' domain profile. 88 143 IPR001356 GO:0003677
Lal16g0941 388 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Lal16g0941 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 40 388 - -
Lal16g0941 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 40 388 IPR044555 GO:0003700|GO:0099402
Lal16g0941 388 SMART HOX_1 80 147 IPR001356 GO:0003677
Lal16g0941 388 SUPERFAMILY Homeodomain-like 83 149 IPR009057 -
Lal16g0941 388 CDD homeodomain 84 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0941 Lal-Chr16 6250605 6253220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0941 1 388 Wox Gene Family AT3G18010 37.162 2.15e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal16g0941 Homeodomain 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0941 - - gmx:100777274 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0913 15 6977475 6980096 Lal16g0941 16 6250605 6253220 ECH
Lal16g0941 16 6250605 6253220 Lal16g0941 16 6250605 6253220 ECH
Lal16g0941 16 6250605 6253220 Lal15g0913 15 6977475 6980096 LSH