Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0937 ATGGCTTCTCAGCCTACAAATCTATGGGTTTTGCTTGGTCTGGGTTTAGCTGGAATTATATTCATCTCTAGAAAACTGAAGAAAACAATCAAACTAGATTTTGGGGCTTTCATTCATAAACTTCAGCTTCTTCCTCCTCCTCAACCTGCTCCTCCTAAAGCCCCTCACCCTCTTACTTCACTCACTTTCGCAATCTCCGACTTATTCAACATCGAAGGACACGTCTCTACATTTGGGCATCCTGAGTGGGAAAAGACACACGAACCTGCTTCTTCCACCTCTCCAGTGGTTTCTGCTCTAGTTGATGGAGGTGCTACATGTGTTGGGACAACGGTTGTGGATGAACTAGCATATGGTATCAGTGGCGAAAACAAGCATTTTGGAACACCAACGAATCCTGCTGTGCCTGCTCGAGTACCTGGGGGCTCCTCTAGTGGTGGTGCTGTGGCTGTAGCCGCTAATTTGGTTGATTTCTCATTGGGTATTGATACTGTTGGAGGAGTCAGAGTACCTGCTGGATTTTGTGGCGTTCTTGGATTTCGACCTTCTTATGGTGCCGTTTCTCATAATGGAATCATACCTGTTTCAACAAGTCTGGACACTGTTGGTTGGTTTGCAAAAGATCCTAATATTTTGCGTCGTGTTGGTCATATACTTATACAAGCTAAGTTTGTTATCCAACGGAATCCTCGACAAATAATTATAGCAGATGATTGTTTTCAACATTTAAATGTCCCTCTTGATAGGAGTTCTCAGTTGGTGATCAAAGCCACTGAGAAGCTTTTTGGAAGGCAAGTGTTGAAGCATATAAATCTTGAGGACTATTTAAGTTCTAAGGTTCCTAGCTTGAAGGGGTCCTCTGGCCAGAAAACAAATGGTGAACTGAAAGCTTCTTCATTAAAATCACTTGCTAACATTATGCAATTCCTTCGAAGACATGAATTCAAACTTAGTCACGATGAGTGGATGAACATAGTAAAGCCTGATCTTCATGCTGCTGTCTCATCACAATTGCATGAAAAGTTGGAGGTATCTGATGTGGAGATTGAAAATTCCAAATCTGTTAGAAGTGAGATGCGTGCTGCTATAAATTCACTTTTGAAGGACGAAGGAATTTTGGTGATCCCTACTGTAGCTGATCCTCCCCCTAAATTGGGTAGGAAGGAGATTGTATCTGAGGACTATCAGAGCCGTGCTTTTAGTCTGTTAAGTATCGCTAGCATATCAGGCTGCTGTCAGGTCACTGTACCATTAGGATTTTATGACAAGTATCCTGTTTCAGTGTCCTTGATAGCTCGGCATGGTGGTGACCGCTTTCTACTGGACACACTACAAACCATGTATACAACTCTCCAAGAGCAGGCTGATTTGGCTGCTAACACTAAATCATCAAAAAATGTTGTCAGTAAGGAAGAATCCGCTGAAATTGCCAAAGAGAAGGGAAATCAAGCCTACAAAGATAAGCAGTGGCAGAAAGCCATTGGTTATTATACAGAAGCTATCAAGCTGAATGGCAATAATGCAACATACTACAGTAACAGGGCTCAAGCATATCTAGAACTCGGGAGTTACGTACCAGCTGAGGTGGATTGTACAAAAGCAATTGACCTTGACAAAAAGAATGTGAAGGCCTATTTCCGTAGAGGCACAGCTAGAGAGATGCTAGGTTACTACAAGGAAGCCATTGATGATTATAAATATGCCCTTGTCCTTGAGCCGACGAACAAAAGGGCATCTTCGGCTGCAGAAAGGATCCGAATCAAGCGTGGAATCAACCTTGTCGTTCGTGATGTCAATAAAAGTGATCCCTATGTTGTTGTTAGAATGGGCAAGCAGAAACTCAAAACTCGTATGATTAAAAAAGATGTTAATCCAGAATGGAATGAAGACCTTACACTTTCCGTTACTCGTCCCCTTTCTCCATTAGTACTGACGGTGTATGATCACGACACATTTAGCAAAGATGATAAAATGGGAGATGCAGAATGTGACATATCAGCATTTATAGAAGCAATAAAAACGAAGAATCAAGAGCTACCAAATGGTACAATAATAAGCATAATACATCCAGACAGAACAAATTGTTTGGCAGAGGATAGTTGCATTGTTTTTAAGGATGGTAAACTTGTCCAAGATATTGTTCTTAGATTGCAACATGTTAAACGTGGTGAGATCCAAATACAATTGCAATGGATTGATCTTCCTGGTTCCAAGGGCTTATAG 2223 0.4152 MASQPTNLWVLLGLGLAGIIFISRKLKKTIKLDFGAFIHKLQLLPPPQPAPPKAPHPLTSLTFAISDLFNIEGHVSTFGHPEWEKTHEPASSTSPVVSALVDGGATCVGTTVVDELAYGISGENKHFGTPTNPAVPARVPGGSSSGGAVAVAANLVDFSLGIDTVGGVRVPAGFCGVLGFRPSYGAVSHNGIIPVSTSLDTVGWFAKDPNILRRVGHILIQAKFVIQRNPRQIIIADDCFQHLNVPLDRSSQLVIKATEKLFGRQVLKHINLEDYLSSKVPSLKGSSGQKTNGELKASSLKSLANIMQFLRRHEFKLSHDEWMNIVKPDLHAAVSSQLHEKLEVSDVEIENSKSVRSEMRAAINSLLKDEGILVIPTVADPPPKLGRKEIVSEDYQSRAFSLLSIASISGCCQVTVPLGFYDKYPVSVSLIARHGGDRFLLDTLQTMYTTLQEQADLAANTKSSKNVVSKEESAEIAKEKGNQAYKDKQWQKAIGYYTEAIKLNGNNATYYSNRAQAYLELGSYVPAEVDCTKAIDLDKKNVKAYFRRGTAREMLGYYKEAIDDYKYALVLEPTNKRASSAAERIRIKRGINLVVRDVNKSDPYVVVRMGKQKLKTRMIKKDVNPEWNEDLTLSVTRPLSPLVLTVYDHDTFSKDDKMGDAECDISAFIEAIKTKNQELPNGTIISIIHPDRTNCLAEDSCIVFKDGKLVQDIVLRLQHVKRGEIQIQLQWIDLPGSKGL 740
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0937 740 Gene3D Tetratricopeptide repeat domain 447 587 IPR011990 GO:0005515
Lal16g0937 740 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Lal16g0937 740 CDD C2_ArfGAP 584 723 - -
Lal16g0937 740 Pfam Tetratricopeptide repeat 543 575 IPR013105 -
Lal16g0937 740 Gene3D C2 domain 588 738 IPR035892 -
Lal16g0937 740 Pfam C2 domain 584 670 IPR000008 -
Lal16g0937 740 ProSiteProfiles TPR repeat region circular profile. 542 575 - -
Lal16g0937 740 PANTHER AMIDASE 1 1 586 - -
Lal16g0937 740 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 586 - -
Lal16g0937 740 Gene3D Amidase signature (AS) domain 47 446 IPR036928 -
Lal16g0937 740 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 584 666 IPR035892 -
Lal16g0937 740 SUPERFAMILY Amidase signature (AS) enzymes 56 443 IPR036928 -
Lal16g0937 740 SMART tpr_5 542 575 IPR019734 GO:0005515
Lal16g0937 740 SMART tpr_5 474 507 IPR019734 GO:0005515
Lal16g0937 740 SMART tpr_5 508 541 IPR019734 GO:0005515
Lal16g0937 740 Pfam Amidase 324 441 IPR023631 -
Lal16g0937 740 Pfam Amidase 55 208 IPR023631 -
Lal16g0937 740 ProSiteProfiles C2 domain profile. 563 679 IPR000008 -
Lal16g0937 740 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Lal16g0937 740 SUPERFAMILY TPR-like 471 584 IPR011990 GO:0005515
Lal16g0937 740 SMART C2_3c 582 677 IPR000008 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal16g0937 Lal-Chr16 6220596 6230246 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0937 33 447 Acyl Lipid Metabolism Gene Families AT1G08980 49.642 4.56e-139 414
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0937 - - gmx:100776197 956.822
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0937 16 6220596 6230246 Lal16g0937 16 6220596 6230246 ECH
Lal16g0937 16 6220596 6230246 Lal23g0697 23 9659610 9660502 LSH
Lal16g0937 16 6220596 6230246 Lal10g0945 10 16792295 16794364 PCT
Lal10g0945 10 16792295 16794364 Lal16g0937 16 6220596 6230246 PCT