Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0927 ATGCAAAACCCCTTCATTCTTTTCCTCTTTCTCCTTCTCCTCCCTTTAGCAAAACCAGATCTTGCTTCTGAACGCGCCGCATTACTCTCCCTCCGATCCTCCGTCGGCGGCAGAACCCTCTTCTGGAACGCTACCAACCAAACCCCATGTAACTGGGCCGGCGTCCAATGCGAACACGACCGTGTCGTCGAGCTCCACCTTCCCGGAGTAGCACTTTCCGGCCAAATCCCTGCCGGAATATTCTCCAACTTAACCCAACTCCGTACACTTAGTCTCCGATTTAACGCCCTCACTGGTCACATACCTTCAGATCTTGCTTCCTGCACCAACCTCAGGAACCTTTATTTGCAACGAAACCTTCTCTCCGGTCCAATCCCTGATTTTCTGTTCGGTTTATCTGATTTGGTTCGGCTTAATTTGGGGTTCAATAACTTCTCGGGTCAGTTCTCGACCGGGTTTAATAATTTGACACGGTTGAGAACGTTGTATCTGGAAAATAACCAGCTTCAAGGTTCTATACCTGATTTGGACAACGTTGTTAACCTTGAACAGTTTAATGTTTCTAATAACTTGCTAAATGGGTCTGTGCCGTTAAAGTTGGAATCTTTTAGTCAAGATTCGTTTTTGGGTAACTCGCTTTGTGGGAAACCACTTAGTCTATGTGCTGGTGATGGTAGAAATGGGAGTGGAAGTGTTCCCATTGAAATTGGGAACAATGGGGGAAAGAAGAAGAAGTTATCGGGTGGTGCTATTGCTGGAATTGTAATTGGATCTGTGGTGGGTATTTTGTTGGTTGTGTTTGTTTTGATTCTTTTGTGTAAGAAGAAGAGTAGCAGCAAGAAAACTAGCTCTGTTGATGTATCAACTGTTAAGGATCGCGAATTGGAGGTCAATGGTGGTGAGAAAACAGTTAGTGATGTGGAGAATGGTGGTCATGGGAATGGGTATTCAGTGGCTGCAGTGGCGGCTGCGGCATTGACGGGGAATGGTAACAAGGGTGGTGAGGTTGTTAATGGTGGTGGAGCGAAGAAGCTGGTGTTTTTTGGGAATTCGGTGAGATTGTTTGATTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTTTTGGGAAAGGGGACTTTCGGGACAGCCTATAAGGCGGCTTTGGAGGCTGGTCTGGTGGTGGCTGTGAAAAGGTTGAAGGATGTGACCATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGTGGTTGGAGCAATGGATCATGAGAGTTTGGTTCCTCTCAGGGCTTACTATTTTAGCAGGGATGAGAAGCTTCTTGTGTATGATTACATGTCAATGGGAAGTTTGTCTGCACTTTTGCATGGAAGCAAAGGAGCAGGTAGGACACCATTGAATTGGGAACTCAGATCAACCATTGCACTTGGAGCTGCTCGCGGCATTGAGTACCTACATTCACAAGGGCCTAATGTTTCTCATGGAAATATAAAGTCATCTAATATCCTCTTAACCAAATCATATGAAGCAAGAGTATCTGATTTTGGCCTTGCACACCTGGCTGGCCCCTCTTCTACCCCCAACCGTGTTGACGGCTACCGAGCACCTGAGGTAACCGATCCTCGTAAAGTATCTCAAAAGGCAGATGTGTACAGTTTTGGTGTATTGCTCTTGGAACTTCTAACCGGTAAGGCACCAACTCATGCTCTCCTAAACGAAGAAGGAGTAGACCTACCTAGATGGGTACAATCTGTTGTTAGAGAAGAGTGGACATCCGAGGTTTTCGATCTTGAGCTCCTCAGGTATCAGAATGTTGAAGAGGAGATGGTTCAATTGTTGCAACTTGCAGTTGATTGTGCAGCACCATATCCTGATAAGCGCCCTTCAATGTCCGAAGTAGCACAAAGCATCGAAGAGTTATGTCGTTCTAGCTCGAAAGAGGATCAAGACCAAATCCAACAACATGCTCCTATCAGTGATATATAG 1959 0.4574 MQNPFILFLFLLLLPLAKPDLASERAALLSLRSSVGGRTLFWNATNQTPCNWAGVQCEHDRVVELHLPGVALSGQIPAGIFSNLTQLRTLSLRFNALTGHIPSDLASCTNLRNLYLQRNLLSGPIPDFLFGLSDLVRLNLGFNNFSGQFSTGFNNLTRLRTLYLENNQLQGSIPDLDNVVNLEQFNVSNNLLNGSVPLKLESFSQDSFLGNSLCGKPLSLCAGDGRNGSGSVPIEIGNNGGKKKKLSGGAIAGIVIGSVVGILLVVFVLILLCKKKSSSKKTSSVDVSTVKDRELEVNGGEKTVSDVENGGHGNGYSVAAVAAAALTGNGNKGGEVVNGGGAKKLVFFGNSVRLFDLEDLLRASAEVLGKGTFGTAYKAALEAGLVVAVKRLKDVTISEKEFKEKIEVVGAMDHESLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGSKGAGRTPLNWELRSTIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYEARVSDFGLAHLAGPSSTPNRVDGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSEVAQSIEELCRSSSKEDQDQIQQHAPISDI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0927 652 ProSiteProfiles Protein kinase domain profile. 362 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0927 652 Gene3D Ribonuclease Inhibitor 23 131 IPR032675 -
Lal16g0927 652 SUPERFAMILY Protein kinase-like (PK-like) 366 627 IPR011009 -
Lal16g0927 652 Gene3D Phosphorylase Kinase; domain 1 337 436 - -
Lal16g0927 652 Pfam Protein kinase domain 365 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0927 652 Pfam Leucine rich repeat 75 121 IPR001611 GO:0005515
Lal16g0927 652 Pfam Leucine rich repeat N-terminal domain 22 57 IPR013210 -
Lal16g0927 652 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Lal16g0927 652 MobiDBLite consensus disorder prediction 625 652 - -
Lal16g0927 652 CDD STKc_IRAK 368 631 - -
Lal16g0927 652 SUPERFAMILY L domain-like 38 203 - -
Lal16g0927 652 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Lal16g0927 652 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 652 - -
Lal16g0927 652 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Lal16g0927 652 Gene3D Transferase(Phosphotransferase) domain 1 437 651 - -
Lal16g0927 652 PANTHER OS05G0588300 PROTEIN 5 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0927 Lal-Chr16 6149320 6152248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0927 20 640 Receptor kinase-like Gene Family AT1G48480 64.818 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal16g0927 Pkinase 3.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0927 - - gmx:100818955 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0927 16 6149320 6152248 Lal15g0907 15 6874526 6878054 LSH
Lal16g0927 16 6149320 6152248 Lal23g0706 23 9720184 9723345 LSH