Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0924 ATGGCTGCTGTTCGTGACCGCCGCCACCTCAACCTCCGTCTCCCTCCTCCAGAACCTTCTGAACGCCGCCATCGTTTCCCTCTCCTCCTACCTCCCACTACCGTCACCAACACCATCTCTATCTCCACTTCCTCCACCGCCGACGCCATCGCCCCCAACGACATTGAAAAACTCGACGTTATCGGCCACGGCAACGGAGGTACTGTCTACAAGGTCCGCCACAAGCGCACCAACGCAATATACGCCCTCAAGGTCGTCCACCCCGATTCCAATCCTATCACGCGCCGCCAGATTCGCCGTGAGATGGACATCCTCCGTCAAACCGATTCCCCTCACGTTGTTCAATGCCATGGCTTATTCGAGAAACCCTCCGGCGATGTGTCCATCGTTATGGAGTACATGGACTTAGGCACGCTCGACACGCTCCTAAAAAATAACGGCACGTTTTCCGAACCCGAACTCGCTTCGGTGGCGCGTCAAGTTCTTAACGGCCTCAGTTACCTTCACGCGCATAAAATAATCCACCGTGATATAAAACCCTCGAATCTGTTAGTTAACAGCAACATGGAAGTTAAAATTGGTGATTTTGGTGTTAGTAAAATTATGCAAAGAACTTTGGACTCGTGTAATTCATACGTTGGCACGTGCGCGTATATGAGTCCGGAGCGGTTCGACCCGGAATCATATGGAGGGAATTATGATGGGTTTGCGGGTGATATATGGAGTTTGGGTTTGACCCTTTTTGAACTCTATGTGGGTTACTTCCCTCTCCTTCCTTCGGGTCAGAGACCCGATTGGGCTACCCTCATGTGTTCCATTTGTTTTGGTGATCCACCCTCGTTGCCCGACGGCGCAACCGCCGAGTTTCGGAGTTTTATTGAGTGTTGCTTGAAGAAGGAGTCTAGTGAAAGATGGACTGCCGCTCAATTATTGACCCACCCGTTTCTTAAGGGTTAA 957 0.5131 MAAVRDRRHLNLRLPPPEPSERRHRFPLLLPPTTVTNTISISTSSTADAIAPNDIEKLDVIGHGNGGTVYKVRHKRTNAIYALKVVHPDSNPITRRQIRREMDILRQTDSPHVVQCHGLFEKPSGDVSIVMEYMDLGTLDTLLKNNGTFSEPELASVARQVLNGLSYLHAHKIIHRDIKPSNLLVNSNMEVKIGDFGVSKIMQRTLDSCNSYVGTCAYMSPERFDPESYGGNYDGFAGDIWSLGLTLFELYVGYFPLLPSGQRPDWATLMCSICFGDPPSLPDGATAEFRSFIECCLKKESSERWTAAQLLTHPFLKG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0924 318 SUPERFAMILY Protein kinase-like (PK-like) 51 317 IPR011009 -
Lal16g0924 318 SMART serkin_6 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0924 318 Gene3D Phosphorylase Kinase; domain 1 33 135 - -
Lal16g0924 318 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 317 - -
Lal16g0924 318 MobiDBLite consensus disorder prediction 1 25 - -
Lal16g0924 318 CDD PKc_MAPKK_plant_like 53 318 - -
Lal16g0924 318 ProSiteProfiles Protein kinase domain profile. 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0924 318 Gene3D Transferase(Phosphotransferase) domain 1 137 318 - -
Lal16g0924 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lal16g0924 318 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 317 - -
Lal16g0924 318 Pfam Protein kinase domain 56 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0924 318 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0924 Lal-Chr16 6125720 6126676 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0924 1 317 MAP Kinase Kinase Gene Family AT1G73500 63.522 2.17e-140 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lal16g0924 Pkinase 3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0924 K20604 - qsu:112003150 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0924 16 6125720 6126676 Lal16g0924 16 6125720 6126676 ECH