Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0917 ATGTGTAGTAGAGGACATTGGAGGCCAGCTGAAGATGATAAACTTCGGGAGTTGGTGGAACACTATGGGCCCCATAATTGGAACGCCATAGCTGAGAAGCTTCGGGGAAGATCAGGGAAGAGCTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAATAGAACTCCATTTACAGAAGAAGAAGAAGAACGTCTTATAGGTTCTCACAGAATTCATGGTAATAGATGGGCTGTGATTGCAAGACTTTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGAATGAGAAGAGAAAGGTCTAAACTACTTTATGCTAAACAACATGTTCATCACACAAATTCTTCTTCAAACCCCAAAGATCATCAACCAAACTATGAGATAACAAGCTTCCCTTCTTCTTTTGTTCACAAGTATGGATACACTTGTGTCAAATATAACCCTTTCCACTTTCCTAACAACTTTCACTTTCAACACCCAGCCTCTAGTTCCACAATGCTTCAAGATAAAAGTCAATCAGTTGAGTTCTATGATTTTCTAAGAGTAAATACTGACCAATCCAATAAAAGTGAAGTAACAGACAACACCAGAAGAGATGAAGAAGAAGTAAATCAAGATGGTGTGGGAAAAGAGAACAAAGATGGCTTTCCATTCATTGATTTTTTATCTGTTGGAAGCTCATAA 708 0.3856 MCSRGHWRPAEDDKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRTPFTEEEEERLIGSHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARMRRERSKLLYAKQHVHHTNSSSNPKDHQPNYEITSFPSSFVHKYGYTCVKYNPFHFPNNFHFQHPASSSTMLQDKSQSVEFYDFLRVNTDQSNKSEVTDNTRRDEEEVNQDGVGKENKDGFPFIDFLSVGSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0917 235 MobiDBLite consensus disorder prediction 195 222 - -
Lal16g0917 235 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lal16g0917 235 Gene3D - 57 122 - -
Lal16g0917 235 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lal16g0917 235 PANTHER MYB PROTEIN-RELATED 1 235 - -
Lal16g0917 235 SMART sant 55 103 IPR001005 -
Lal16g0917 235 SMART sant 3 52 IPR001005 -
Lal16g0917 235 Pfam Myb-like DNA-binding domain 7 67 - -
Lal16g0917 235 Gene3D - 4 55 - -
Lal16g0917 235 CDD SANT 7 48 IPR001005 -
Lal16g0917 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Lal16g0917 235 MobiDBLite consensus disorder prediction 199 217 - -
Lal16g0917 235 PANTHER MYB-RELATED PROTEIN A-LIKE 1 235 - -
Lal16g0917 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Lal16g0917 235 CDD SANT 58 101 IPR001005 -
Lal16g0917 235 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0917 Lal-Chr16 6050120 6053056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0917 1 235 MYB Transcription Factor Family AT1G17950 57.490 1.87e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g0917 Myb_DNA-bind_6 9.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0917 K09422 - gmx:100811746 329.717