Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0915 ATGAGAGACATGGCTGGTTTTGAAAAGGGCGAGGTGCCAATGCTGTCAGACGCTCGTCCGCAACGATTTGATGAGAGGTCTGTGTCTAGGACACGAAGCGTGTCAATTTCTATTCCCATGGAACTGTATCATAGAGAAAGCGATGTTTTGGGACACACTGGTCCTCTAAGGAGTGAGAGGAAAACTCCTTTTGTGCACATGAGTGGTCCACTATATGTACCTGGAAATCTTGCAAGGCAGAATATAGTAGGAGGAGGGAGCAAAGCAGTGGAAAGCAAGGAAGAAAAGTTTCCATCTGTCGGCGGCGTGGGAGAACATGATTTGAGTAATCACAATGCTGGGAGAAATGAACATTTGCTGAGGTCTGGTCAACTAGGAATGTGTAATGATCCTTATTGTACAACTTGCCCAACTTACTTCAAGCCTACCGAAGCTCAACAAAGAAATTCCAAAGCTCATGGTATATTTGATCCCAAGTTCCACAATGCCCTTTATGGCGATGCCAAGGGTTGGGCAAGAAGATTATTGGCTTTGTTGAATCCATATGTTCCTGGTGTAATGAACCCTCATACTAAGGTTGTACAACAGTGGAACAAGTTTTTTGTAATTTGTTGCTTGGTCGCAATTTTTGTGGACCCATTATATTTCTTCTTGTTCTCTGTAAAGCAGGATCACAAATGCATTGTAATAAACTGGCAGATGACAACAATACTTGTTTTACTTCGAAGCATGACTGATTTCGTATATTTTATAAACATTCTTCTTCAGTTTAGGCTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCCGGGGAATTAGTTGACCATCCTAAGAGAATCGCTCTTCACTACCTCCAGACCTATTTTGTCATGGACTTATTTATTGTACTTCCACTTCCTCAGATCATAATATTGTTTGTTCTACCAAAACACATGGGGTTATCAGGAGCAAATTTTGCGAAGAACCTTTTGCGCCTCATGATCCTTTTTCAGTATATTCCCAGATTGTGTAGGTTTTTGCCTCTGGTAATATCTCCAACAGGATTCATATTTGAGTCAGCATGGGCAAATTTCTTCATAAACCTTTTCATCTTTATGCTGTCTGGCCATGCTGTTGGGTCTAGCTGGTACCTCTTTGGTCTACAGAGGGTGAATGAATGCCTAAGACGTGCCTGCAGCCATACTCATATTGAAGGATGCATGAAATTCATTGATTGTGGGGATGGAAGTGATGAAAAATATCAATCCAGCGCGAATTGGATTCGCTGGAAAAACAGTTCTGATGCAAGTGCTTGTTTTACTGAAGATGGATTCTCTTATGGCATCTATCTCAGAGCGGTCAACCTTACTGCTGAACATGATGTTATCACAAAATATGTATATTCCTCATTTTGGGGATTCCAGCAAATTAGTACTCTTGCTGGCAATTTAAGCCCCAGCTATTTTGTTGGGGAAGTCCTTTTTACCATGGCTATCACTGGATCAGGACTTCTACTTTTTGCTCTCCTCATTGGAAACATACAGAATTTTCTTCAGGCTCTTGGAAGGAGGAGGCTAGAAATGTCACTTAAACAACGTGATGTTGAGCAGTGGATGAGCCATCGACGCTTACCTGTAGATCTGAGAAGGAGAGTGAGGCATGCAGAACGCTATAGATGGGCCACAACAAGAGGGGTTAATGAAGAAATGCTTTTGGAGAATTTTCCAGAAGACCTCCAGCGAGACATCAGGCGCCATCTCTTTAAATATGTTAAGAAAGTTCGTATTTTTGCCCTGATGGATGAACCTATCTTGTATGCGATCTGTGAGAGACTAAGACAAAAGACATATATAAAAGGTAGCAAAGTTTTATATCATGGTGGTTTGGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGCATAGGTGAAGATGGGATTGTTCCTTTATCTGAAGGTGATGTTTGTGGTGAAGAACTTCTGACGTGGTGTCTTGAGCATTCTTCTGTTAACAAAGATGGTGGAAAAGTAAGGATTCCAAGCCAGAGGTTGATTTGCAACAGGACAGTAGTGTGCTTAACAAATGTAGAGGCATTTTCTCTCCGCGCTGCAGACCTTGAAGAAGTTACTAGCCTTTTTGCAAGGTTCTTACGGAGTCCCCGTGTTCAAGGAGCCATAAGGTATGAATCACCCTACTGGAGATGCCTTGCTGCGACACGCATCCAGGTTTCGTGGAGATATAGGAAGAAATGTCTTAGACGTGCTGACATCTCACAATCAACTGAAACATCAAGGTAG 2286 0.423 MRDMAGFEKGEVPMLSDARPQRFDERSVSRTRSVSISIPMELYHRESDVLGHTGPLRSERKTPFVHMSGPLYVPGNLARQNIVGGGSKAVESKEEKFPSVGGVGEHDLSNHNAGRNEHLLRSGQLGMCNDPYCTTCPTYFKPTEAQQRNSKAHGIFDPKFHNALYGDAKGWARRLLALLNPYVPGVMNPHTKVVQQWNKFFVICCLVAIFVDPLYFFLFSVKQDHKCIVINWQMTTILVLLRSMTDFVYFINILLQFRLAYVAPESRVVGAGELVDHPKRIALHYLQTYFVMDLFIVLPLPQIIILFVLPKHMGLSGANFAKNLLRLMILFQYIPRLCRFLPLVISPTGFIFESAWANFFINLFIFMLSGHAVGSSWYLFGLQRVNECLRRACSHTHIEGCMKFIDCGDGSDEKYQSSANWIRWKNSSDASACFTEDGFSYGIYLRAVNLTAEHDVITKYVYSSFWGFQQISTLAGNLSPSYFVGEVLFTMAITGSGLLLFALLIGNIQNFLQALGRRRLEMSLKQRDVEQWMSHRRLPVDLRRRVRHAERYRWATTRGVNEEMLLENFPEDLQRDIRRHLFKYVKKVRIFALMDEPILYAICERLRQKTYIKGSKVLYHGGLVEKMVFVVRGKLESIGEDGIVPLSEGDVCGEELLTWCLEHSSVNKDGGKVRIPSQRLICNRTVVCLTNVEAFSLRAADLEEVTSLFARFLRSPRVQGAIRYESPYWRCLAATRIQVSWRYRKKCLRRADISQSTETSR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0915 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 752 - -
Lal16g0915 761 SUPERFAMILY cAMP-binding domain-like 518 710 IPR018490 -
Lal16g0915 761 Gene3D - 199 515 - -
Lal16g0915 761 SUPERFAMILY Voltage-gated potassium channels 189 518 - -
Lal16g0915 761 Gene3D Helix hairpin bin 518 582 - -
Lal16g0915 761 Gene3D Jelly Rolls 588 711 IPR014710 -
Lal16g0915 761 MobiDBLite consensus disorder prediction 1 26 - -
Lal16g0915 761 Pfam Ion transport protein 196 518 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal16g0915 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 8 752 - -
Lal16g0915 761 CDD CAP_ED 590 705 IPR000595 -
Lal16g0915 761 ProSiteProfiles cAMP/cGMP binding motif profile. 590 657 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0915 Lal-Chr16 6024694 6036230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0915 8 667 Ion Channels AT3G17700 61.778 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0915 K05391 - gmx:100782506 1123.23