Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0913 ATGGAGTATGCAAGTAGTGGTGGAGGAGGTGGGTCCCATTCCCCAGGAGAACACCATCGAGAAGATCATGAAGATGGTTCTGATTCCCAAAGAAGAAACAAACGCTACCATCGTCATACTTCTAACCAAATTCAAAGGCTTGAATCAATGTTCAAAGAGTGTCCACACCCCGATGAAAAACAAAGGATGCAGCTAAGCAGAGAATTAGGCTTAGCACCAAGACAGATAAAATTCTGGTTCCAAAATAGAAGGACCCAGTTGAAGGCTCAACACGAAAGACAAGATAACTCTACACTACGAGCAGAAAATGACAAAATACGTTGCGAGAATATTGCTTTTAGGGAGGCCATGAAAAATTGTGTATGCCCTAATTGTGGTCCAACTCCTCTTAATGAAGATTCTTATTTTGATGACCAAAAGATGAGATTAGAGAATCTCCACCTCAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCTGCTAAGTACATTGGAAGACCAATTTCTCAACTCCCTTCAATTCCACCTTTTCATATGTCCCCTTTGGACTTGTCTATGGGCACTAGTACTTTTGGAACCCAACAAGGATTGTTTAACGTTGGTGGTTGTAGTGGTGTTGGTTCTTCCCTTGATCTTGATCTTCTACAAGGGATTTCTTCTAATTCTATGCCAAATTTTCCGTACCAACCTGGTTCCCTTTCAGAAATGGATAAGTCTATTATGTCAACTATTGCTACCAATGCCCTTGAAGAATTTCTCAGGCTCTTGCACACAAATGAACCCTTGTGGATCAAGTCTACCATTGATGGAAAAGATTTTCTTAATCTTGAGACGTATGAAAGAATGTTCCCTAAAGCAAATACTCGTCTCAAAAATCCTAATGTTCGCGTTGAAGCATCAAGAGATTCAACCGTTGTTATAATGAATAGCTCAAATTTGGCTGAAATGTTCATAGATGCAAACAAGTGGAAGGAACTTTTTTCTACTATTGTTTCATCTGCAAGGACGGTAGAGGTCCTATCTTCAGGCATCATGGGTAGTAACAATGGGTCATTGCAGCTGATGTATGAAGAGTTACAAGTGTTATCTCCACATGTTTCTGCTCGTGAGTTCTACTTCCTTCGTTACTCACAGCAGATTGAGCAAGGAACATGGGCAATAGTTGATGTTTCATATGATTTTCCACAAGACAACCAATTTTCTCCACAACTTCGCTCTCACCGTTTCCCTTCGGGGTGTTTAATCCAAGACTTTACAAATGGACAGTCCAAGGTTACATGGATCGAGCATGTAGAGATTGAAGACAAAACTCTTCCCCATAGGTTTTTCAAAAATCTAATATATAATGGATTGGCATTTGGGGCAGAAAGATGGCTTGCTACACTTCAGAGAATGTGTGAAAGAAATGCTTGTCTAATGGTCACAACCGATCCCACCCATGATTTTGGAGGAGCAATAACATCACCTGAAGGGAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACAAATTTCTGTGCTAGTATTAGCACATCAAATGGTCAAAGGTGGACCATACTCTCTGGATTAGATGAGGTTGGAGTCAGAGTCAATGTCCATAAGAATACAGATCCAGGACAACCTAATGGTGTAGTTCTAAGTGCTGCCACTACCATTTGGCTCCCTATCCCTCCACACATTGTATTCAATTTTTTCAAGGATGAGAGGAAAAGACCCCAGTGGGATGTTCTTTCTAATGGTAATCCTGTGCAAGAGGTTGCACACATAGCAAATGGTTCTCACCCTGGTAACTGCATATCAGTTCTTCGAGCTTTCAACAACACTCAAAACAACATGTTAATACTTCAAGAGAGTTGTATAGATTCTTCTGGTGCACTTGTGGTATATTGTCCAATAGATCTTCCATCCATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCTCTACTACCATCTGGGTTTTCCATTTCCCCTGATGGCCAACAAGACCAAAGAGGAGGAGGAGATGGAGCATCAACAAGCTCAAGCATAAGCAAGAACATAGGTAGATGTGGTGGTTCATTGATCACAGTTGCATTCCAAATCCTAGTGAGTAATTTGCCATCAGCAAAACTCAACATGGATTCAGTTACAACAGTTAATAATCTTATAAGCACCACTATCCATCAAATTAAGGGTTCCTTGAATTGTCCCACTTCCTCATGA 2211 0.408 MEYASSGGGGGSHSPGEHHREDHEDGSDSQRRNKRYHRHTSNQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQLKAQHERQDNSTLRAENDKIRCENIAFREAMKNCVCPNCGPTPLNEDSYFDDQKMRLENLHLKEELDRVSSIAAKYIGRPISQLPSIPPFHMSPLDLSMGTSTFGTQQGLFNVGGCSGVGSSLDLDLLQGISSNSMPNFPYQPGSLSEMDKSIMSTIATNALEEFLRLLHTNEPLWIKSTIDGKDFLNLETYERMFPKANTRLKNPNVRVEASRDSTVVIMNSSNLAEMFIDANKWKELFSTIVSSARTVEVLSSGIMGSNNGSLQLMYEELQVLSPHVSAREFYFLRYSQQIEQGTWAIVDVSYDFPQDNQFSPQLRSHRFPSGCLIQDFTNGQSKVTWIEHVEIEDKTLPHRFFKNLIYNGLAFGAERWLATLQRMCERNACLMVTTDPTHDFGGAITSPEGKRSMMKLAQRMVTNFCASISTSNGQRWTILSGLDEVGVRVNVHKNTDPGQPNGVVLSAATTIWLPIPPHIVFNFFKDERKRPQWDVLSNGNPVQEVAHIANGSHPGNCISVLRAFNNTQNNMLILQESCIDSSGALVVYCPIDLPSINIAMSGEDPSYIPLLPSGFSISPDGQQDQRGGGDGASTSSSISKNIGRCGGSLITVAFQILVSNLPSAKLNMDSVTTVNNLISTTIHQIKGSLNCPTSS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0913 736 Gene3D - 241 468 IPR023393 -
Lal16g0913 736 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Lal16g0913 736 SUPERFAMILY Bet v1-like 234 468 - -
Lal16g0913 736 MobiDBLite consensus disorder prediction 1 42 - -
Lal16g0913 736 ProSiteProfiles START domain profile. 233 470 IPR002913 GO:0008289
Lal16g0913 736 MobiDBLite consensus disorder prediction 14 32 - -
Lal16g0913 736 MobiDBLite consensus disorder prediction 659 679 - -
Lal16g0913 736 CDD homeodomain 34 91 IPR001356 GO:0003677
Lal16g0913 736 Pfam Homeodomain 34 88 IPR001356 GO:0003677
Lal16g0913 736 SUPERFAMILY Homeodomain-like 14 90 IPR009057 -
Lal16g0913 736 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Lal16g0913 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 733 IPR042160 -
Lal16g0913 736 CDD START_ArGLABRA2_like 237 466 - -
Lal16g0913 736 Pfam START domain 243 467 IPR002913 GO:0008289
Lal16g0913 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 7 733 - -
Lal16g0913 736 SMART START_1 242 467 IPR002913 GO:0008289
Lal16g0913 736 Gene3D - 17 106 - -
Lal16g0913 736 SUPERFAMILY Bet v1-like 488 727 - -
Lal16g0913 736 SMART HOX_1 31 94 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0913 Lal-Chr16 6015043 6018917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0913 28 736 Homeobox Transcription Factor Family AT1G73360 62.709 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal16g0913 START 8.5e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0913 K09338 - gmx:100785023 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0913 16 6015043 6018917 Lal16g0913 16 6015043 6018917 ECH
Lal16g0913 16 6015043 6018917 Lal15g0896 15 6745523 6749358 LSH
Lal16g0913 16 6015043 6018917 Lal23g0716 23 9803184 9807772 LSH
Lal16g0913 16 6015043 6018917 Lal8g0493 8 3370101 3373345 PCT
Lal16g0913 16 6015043 6018917 Lal25g0506 25 3574847 3578252 PCT
Lal16g0913 16 6015043 6018917 Lal10g0928 10 16672584 16676709 PCT
Lal8g0493 8 3370101 3373345 Lal16g0913 16 6015043 6018917 PCT
Lal25g0506 25 3574847 3578252 Lal16g0913 16 6015043 6018917 PCT
Lal10g0928 10 16672584 16676709 Lal16g0913 16 6015043 6018917 PCT