Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0909 ATGCAAAGTGAAGCACAAGATTTTGAACAAAAGTTGATGAGCAAGAAGCGTAAAGCTTTACATAATGATTGTTTGGAGCTATATGAGAACACAATTTTCCATCTTAACCGCACCATTGAATGCATGGATGGGAAGAGAAGTTGTTCAACGGTTGATGTACAAACTTGGCTCAGCGCTGCTCATACAAACATCCAAACTTGTCCAACAGCGGCCTCAGAACTCAATGTTGTAGATTTTAAGGTGTCAAAATTGATCAACAATGTTACTGAGATGTTAAGTAACAGCTTAGCCATCAACATGGATTTCCTAAAACAAAAGTCAAATAATCATCACACAGCAAAAGAAAAAAGAAAAGTGTTTCCAAGTTGGCTTTCTAGTTATGATAGGAATCTATTAAAGCCAAATTCAACGATAGAGGCAGATCTTGTGGTTGCAAGAGATGGTTCGGGACATTTCAGGAATATACAAGACGCTATTAATGAAGCAGCAAAGAGAGAAACAAAGACAAGGTTTATTATACATGTAAAGAAAGGGACTTACGCAGAGAATATTAACGTGGATCTGAAAAATGAAAATATCACGCTGAATTTCAATCAATGGAAAAAAATCCATACACTCTTATTGTTATCTTTGGTTCTCTCAATAGCCTCATCAAGAAGAGAAACTTCCTGCTCCAAAAACAACAACATTGATTGGTGGTGCAACCAAACCCCACACCCAAAATCATGCACGTACTACATAAGTCAAATCAACAACTATCACCAAATCAAACACAAGTCCTTGTTTCGGGTACTGCTTGTTCAATTAGCCTTAAAGCAAGTGCTTATCATGCAAAGTGAAGAACATGATTTAGAACAACACTTGACGAGCAAGAAGCATAAAGCTTTATATAATGATTGTTTGGAGCTCTATCAGAACACAGTTTTCCATCTCAATCGCACCATTGAGTGCATGCATGCAAATAGAAGTTGTTCACCAGTTGATGTACAAACTTGGCTCAGCACTGCTCATACAAACATCCAAACTTGTCCAACAGCGGCCTTAGAACTCAATGTTGTTGATTTCAAGGTGTCAAAATTGAGCAACAATGTTACTGAAATGATAAGTAATAGCTTAGCTATCAACATGGATATCCTGAAAACAAATGCAAGTAACCATAACACAGCAAAACCAAAAGGAGAAGTGTTTCCAAGTTGGCTTTCTAGTCATGATAGGAATCTATTAAAGCCAAATTCAACGATAGAGGCAGATCTTGTGGTTGCAAGAGATGGTTCGGGAGATTTCAAGAAGATACAAGACGCTATTAATGAAGCAGCAAAGAGAGAAACAAAGAAAAGGTTTGTTATACATGTAAAGGAAGGGACTTACGAAGAGCATATTAAAGTGGGTCTGAAAAATGAAAGGATCATGCTGGTTGGTGATGGATTGAAAATGACCATAATAAGAGGTAGCAGAAGTTTTAAAGATGGCTTTAGCATCTATAGCTCACCAACTGCAGGCAATGCAGCTATAGATGGATCACACTTTATTGCACGTGATATTAGCTTCGAAAACGTGTCTGGTCCTAGTAAGGGTCAAGCCGTGGCACTTCGATCATCTTCCGACAAGTCTATTTTCTACCGTTGTTCTATATCAGGTTACCAAGACACACTCTTTGTTCATAATCAGCGCCAATTTTACATTGAATCCTACATCTATGGCACTGTAGACTTCATATTTGGCGATGCTGCAGTTCTGTTCCGAAATTGTATCATTTATGCTAGAAAGCCTCTATGGGGCCAAGAAAACGTGATTACAGCACAAGGCAGAGACAACGAAAATAAAAACTCCGGAATTTCAATCCAGATTAGCCAAATTAAGGCTGCACCAGATCTAAAGAAAGTTGGTCATAAAGTGAAAACCTACTTGGGAAGGCCATGGCAAAAATATGCAAGAGTAGCGGTCTTGTACAGTTTCTTAGGCACTTTGGTGGAGCCAAAGGGTTGGCTTACATGGAATAATAGTGACTTTGCTCTTGATACATTATACTTTGGAGAGTATAGGAATTATGGGCCAGGTTCATCCATATGCGATAGAGTAACATGGAAAACTTTCCATGTCATAACAGATTCAGATGAGGCACGTCAGTTCACAGCTGATGTCCTCCTTGCTTGA 2154 0.3858 MQSEAQDFEQKLMSKKRKALHNDCLELYENTIFHLNRTIECMDGKRSCSTVDVQTWLSAAHTNIQTCPTAASELNVVDFKVSKLINNVTEMLSNSLAINMDFLKQKSNNHHTAKEKRKVFPSWLSSYDRNLLKPNSTIEADLVVARDGSGHFRNIQDAINEAAKRETKTRFIIHVKKGTYAENINVDLKNENITLNFNQWKKIHTLLLLSLVLSIASSRRETSCSKNNNIDWWCNQTPHPKSCTYYISQINNYHQIKHKSLFRVLLVQLALKQVLIMQSEEHDLEQHLTSKKHKALYNDCLELYQNTVFHLNRTIECMHANRSCSPVDVQTWLSTAHTNIQTCPTAALELNVVDFKVSKLSNNVTEMISNSLAINMDILKTNASNHNTAKPKGEVFPSWLSSHDRNLLKPNSTIEADLVVARDGSGDFKKIQDAINEAAKRETKKRFVIHVKEGTYEEHIKVGLKNERIMLVGDGLKMTIIRGSRSFKDGFSIYSSPTAGNAAIDGSHFIARDISFENVSGPSKGQAVALRSSSDKSIFYRCSISGYQDTLFVHNQRQFYIESYIYGTVDFIFGDAAVLFRNCIIYARKPLWGQENVITAQGRDNENKNSGISIQISQIKAAPDLKKVGHKVKTYLGRPWQKYARVAVLYSFLGTLVEPKGWLTWNNSDFALDTLYFGEYRNYGPGSSICDRVTWKTFHVITDSDEARQFTADVLLA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0909 717 Pfam Pectinesterase 141 195 IPR000070 GO:0030599|GO:0042545
Lal16g0909 717 Pfam Pectinesterase 417 715 IPR000070 GO:0030599|GO:0042545
Lal16g0909 717 TIGRFAM PME_inhib: pectinesterase inhibitor domain 206 375 IPR006501 GO:0004857
Lal16g0909 717 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 99 IPR006501 GO:0004857
Lal16g0909 717 SUPERFAMILY Pectin lyase-like 413 712 IPR011050 -
Lal16g0909 717 CDD PMEI-like_3 17 99 - -
Lal16g0909 717 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 5 99 IPR035513 -
Lal16g0909 717 SMART PMEI_2 225 374 IPR006501 GO:0004857
Lal16g0909 717 SMART PMEI_2 1 98 IPR006501 GO:0004857
Lal16g0909 717 PANTHER PECTINESTERASE 1 195 - -
Lal16g0909 717 PANTHER PECTINESTERASE 204 717 - -
Lal16g0909 717 Gene3D - 411 717 IPR012334 -
Lal16g0909 717 ProSitePatterns Pectinesterase signature 2. 565 574 IPR033131 -
Lal16g0909 717 PANTHER PECTINESTERASE 204 717 - -
Lal16g0909 717 PANTHER PECTINESTERASE 1 195 - -
Lal16g0909 717 SUPERFAMILY Pectin lyase-like 137 196 IPR011050 -
Lal16g0909 717 Gene3D - 101 208 IPR012334 -
Lal16g0909 717 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 228 375 IPR035513 -
Lal16g0909 717 Pfam Plant invertase/pectin methylesterase inhibitor 229 374 IPR006501 GO:0004857
Lal16g0909 717 Pfam Plant invertase/pectin methylesterase inhibitor 11 98 IPR006501 GO:0004857
Lal16g0909 717 Gene3D Invertase/pectin methylesterase inhibitor family protein 224 378 IPR035513 -
Lal16g0909 717 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 100 IPR035513 -
Lal16g0909 717 CDD PMEI-like_3 232 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0909 Lal-Chr16 5992801 6000278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0909 222 717 Carbohydrate Esterase AT5G51490 49.702 1.77e-168 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0909 K01051 - gmx:100806133 595.89