Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0908 ATGGGAAAAATATTCGTTACACTCTTATTGTTATCTTTGATTCTCTCAATAGCCTCATCAATAAGAGCAACTTCCCCCAAGAACAACATTTGGTGGTGCAACCAAACCCCACACCCAGAATCATGCGAGTACTACACAAGTAAAACCAACAACTATCAAGAAATCACCCACAAATCATTGTTTCGGTTAATGCTTGTTCAATTAGTATTAAAGCAAGTGCTTATCATGCAAAGTGAAGCACAAGATTTTGAACAAAGCTTGAAGAACAAGAAGCATAAAGCTTTACATAACGATTGTTTGGATCTATATGAGAACACAATTTTCCATCTCAACCGCACCATTGAGTGCATGGATGGGAAGAGAAGTTGTTCACCGGTTGATGTACAAACTTGGCTCAGCACTGCTCATACAAATATCCAAACTTGTCAAACAGAGGCCACAATAGTCAATGCTGTAGATTTCAAGGTGTCAAAATTGAGCAACAACGTTACCGAGTTGATAAGTAGCAGCTTAGCCATAAATGCGGGTTTTCTGAAAAAAAAGGCAAATCATCATCACATATCAAAAGGAAAAAGGAAAAAGTTTCCAAGTTGGGTTTCTAGTGATGATAGGAAGCTATTGAAGTCACGTTCATCGATAAATGCAGATCTTATGGTTGCAAAAGATGGTTCAGGACATTTCATGAATATCCAAGACGCTATCAATGAAGCAGCAAAGAGAGAATCAAAGACAAGATTTGTTATATATGTAAAGAAAGGGACTTATGCAGAGAATATTAAAGTGGATGTGAACAATGAAAACATCATGCTGGTTGGTGATGGAATGAAAAAGACCATAATAACAGCTATAGATGGATCCAACTTTATTGCACGTGACATTAGCATCCAAAATACGGCTGGTCCTGTCATGGGTCAAGCCGTGGCACTTCGATCATCTTCCGACATGTCTGTCTTCTACCATTGTTCTATAGCAGGTTATCAAGACACACTCTATGTTCATGCCCAACGTCAATTTTACACTGGATGTCACATCTATGGCACTGTAGACTTCATATTTGGTGATGCTACTGCTATGTTCCAACATTGTGTCATTTATGCAAGAAAGCCATTACCTAAACAATCAAACAAGATTACAGCACAAGGCAGAACCAATGTACATAAAAACTCAGGAATTTCAATCCAGCATTGTCGAATTAAGGCTGCACCAGACCTCAAGCCCTATGTTGACAACGTCACAACCTTCTTAGGAAGGCCATGGAAAAGATATGCAAGAGTAGCGATCATGTACACTTTCTTAGACACCTTGGTGAACCCAAAGGGTTGGTCTCCATGGAATAAAAGTGACTTTGCTCTTGATACATTATATTATGGAGAGTATAAAAATTATGGGCCAGGTTCATCTTTAAGTGACAGAGTAAAATGGCCTACTTTCCATGCCATAACAAGCTATTCTGAGGCATTTCCGTTTACAATTGATGCCTTCTTCTCTGACCCTACATTATTGCCTACCACAAATGTGTCAATTAGCACTGGCCTTTGA 1539 0.3886 MGKIFVTLLLLSLILSIASSIRATSPKNNIWWCNQTPHPESCEYYTSKTNNYQEITHKSLFRLMLVQLVLKQVLIMQSEAQDFEQSLKNKKHKALHNDCLDLYENTIFHLNRTIECMDGKRSCSPVDVQTWLSTAHTNIQTCQTEATIVNAVDFKVSKLSNNVTELISSSLAINAGFLKKKANHHHISKGKRKKFPSWVSSDDRKLLKSRSSINADLMVAKDGSGHFMNIQDAINEAAKRESKTRFVIYVKKGTYAENIKVDVNNENIMLVGDGMKKTIITAIDGSNFIARDISIQNTAGPVMGQAVALRSSSDMSVFYHCSIAGYQDTLYVHAQRQFYTGCHIYGTVDFIFGDATAMFQHCVIYARKPLPKQSNKITAQGRTNVHKNSGISIQHCRIKAAPDLKPYVDNVTTFLGRPWKRYARVAIMYTFLDTLVNPKGWSPWNKSDFALDTLYYGEYKNYGPGSSLSDRVKWPTFHAITSYSEAFPFTIDAFFSDPTLLPTTNVSISTGL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0908 512 PANTHER PECTINESTERASE 2 511 - -
Lal16g0908 512 Pfam Pectinesterase 216 495 IPR000070 GO:0030599|GO:0042545
Lal16g0908 512 SUPERFAMILY Pectin lyase-like 213 510 IPR011050 -
Lal16g0908 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 175 IPR035513 -
Lal16g0908 512 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 175 IPR006501 GO:0004857
Lal16g0908 512 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Lal16g0908 512 PANTHER PECTINESTERASE 2 511 - -
Lal16g0908 512 CDD PMEI-like_3 31 179 - -
Lal16g0908 512 Gene3D - 210 512 IPR012334 -
Lal16g0908 512 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857
Lal16g0908 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 177 IPR035513 -
Lal16g0908 512 SMART PMEI_2 25 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0908 Lal-Chr16 5977495 5979328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0908 27 512 Carbohydrate Esterase AT5G51490 47.059 2.71e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0908 K01051 - gmx:100806133 583.563