Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0906 ATGGGGAAAATATTCCTTAAACTCTTATTGTTATCTTTGGTTCTCCCAATAGCCTCGCCAAGAAGACCAACTTTCTCCAACAACAACATAGATTTGTGGTGCAACCAAACCCCACACCCGGAATCTTGCAAGCACTACATAAGTCTAACCAACAACTATCACCAAATCAAACAAAAATCCTTGTTTCGGGTAATACTTGTTCATTTGGCCTTAAAGCATGTTCTTATCATGCAAAGTGAAGCACAAGAAATTGCACAAAGCTTGATGAGCAAGAATCATAAAGCTTTACATAACGATTGTTTGGAGTTATATGAGAACACAATTTTCCATCTCAACCGCACCATTGAGTGCATGGATGGGAAGAGAAGTTGTTCACCGGTTGATGTACAAACTTGGCTCAGCACTGCTCATACAAACATCCAAACTTGTCCAACAGCGGCTGCAGAACTCAACGCTATAGATTTCAAGGTGTCAAAATTGAACAACAATATTACTGAGATGATAAGTAACAGCTTAGCTATCAACACGGATTTCCTGAAACAAAATAAAAATAATCACCGGTTATCAAAAGGAGGAAGAAATGTGTTTCCAAGTTGGCTTTCTAGTGATGATATGAATCTATTGATCTCAAATTCATCCATAAAGGCAGATCTTGTGGTTGCAGAAGATGGTTCGGGACATTTCAAGAATATCCAAGATGCTATCAATAAAGCAGCCGAGAGAGAATCAAAGACAAGATTTGTTATATATGTGAAGAAAGGCACTTACGAAGAGAATATTAAAGTGGATGTGAACAATGAAAACATCATGATGATTGGTGATGGAACGAAACAAACCATAATAACTGCTATAGATGGATCCCATTTTATTGCACGTGACATTACATTCCAAAACACGGCGGGTCCTCTCAAGGAGCAAGCGGTGGCGCTCCGATCAGCTTCCGACTTTTCTGTCTTCTATGGTTGTTCCATAGCAGGTCACCAAGACACGCTCTACGTTCAAGCTCAGCGTCAATTTTTTACAGAATGCAAGATATATGGCACTATAGACTTCATATTTGGTGATGCTGCAGTTGTGTTCCAAAATTGTCTGATTTATGTAAGAAAGCCTTTACATGGCCAATCAAACATGATTACAGCACAAGGCAGAGACAATGAACATAAAAACTCAGGAATTTCAATCCAGGATTGCCAAATTAAGGCTGCACCAGATCTCAAGCCCGTTGGTGACGAAGTCGCAACCTTCTTGGGAAGGCCATGGAAACCATATGCAAGAGTAGCTGTCATGAACACTTTCTTAGACACCTTGGTGGACCCACAGGGTTGGTCTTCATGGGAAAACACTGATCATGGTCTGAATACATTATATTTTGGAGAATATAATAATTATGGGCCAGGTTCATCCACAAGCAGTAGAATAAAATGGCCTACTTTTCATGTGATAGGAAGCCTCTCTGAGAGATTTGGAGGAAAATCTCTCTCTAGATATATCAAGTCTTCCATCTTGCATGTAACTAGAGACAACTGGTCCTTTGCTTTGAGCAATTCAGTTTGGTTGATTGGCAATGGTTCCAATGTGAACTTATGGAGAAACAATTGGTTAGACATCTCTTTGGTCCAATCAATGAACATCCCTGAAGTGCTTCACAAGTCTCTATTAGCATCAATAGCTGATTTTTGGCAAGACTACACATGGAGAATTCCCTCTAATTTGGCTAATATTTATCCAGACATCATTACCAGAGTCTCTGCCATAACTGCTTCAAATCAGAATGATAGATTGGTGTGGCAAGGATCTTCAGATGGGGCACTCTCTCAAATTGGCTTATTCTAA 1833 0.3972 MGKIFLKLLLLSLVLPIASPRRPTFSNNNIDLWCNQTPHPESCKHYISLTNNYHQIKQKSLFRVILVHLALKHVLIMQSEAQEIAQSLMSKNHKALHNDCLELYENTIFHLNRTIECMDGKRSCSPVDVQTWLSTAHTNIQTCPTAAAELNAIDFKVSKLNNNITEMISNSLAINTDFLKQNKNNHRLSKGGRNVFPSWLSSDDMNLLISNSSIKADLVVAEDGSGHFKNIQDAINKAAERESKTRFVIYVKKGTYEENIKVDVNNENIMMIGDGTKQTIITAIDGSHFIARDITFQNTAGPLKEQAVALRSASDFSVFYGCSIAGHQDTLYVQAQRQFFTECKIYGTIDFIFGDAAVVFQNCLIYVRKPLHGQSNMITAQGRDNEHKNSGISIQDCQIKAAPDLKPVGDEVATFLGRPWKPYARVAVMNTFLDTLVDPQGWSSWENTDHGLNTLYFGEYNNYGPGSSTSSRIKWPTFHVIGSLSERFGGKSLSRYIKSSILHVTRDNWSFALSNSVWLIGNGSNVNLWRNNWLDISLVQSMNIPEVLHKSLLASIADFWQDYTWRIPSNLANIYPDIITRVSAITASNQNDRLVWQGSSDGALSQIGLF 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0906 610 PANTHER PECTINESTERASE 2 486 - -
Lal16g0906 610 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 178 IPR035513 -
Lal16g0906 610 SMART PMEI_2 25 174 IPR006501 GO:0004857
Lal16g0906 610 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Lal16g0906 610 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Lal16g0906 610 CDD PMEI-like_3 32 180 - -
Lal16g0906 610 SUPERFAMILY Pectin lyase-like 214 486 IPR011050 -
Lal16g0906 610 Pfam Pectinesterase 217 484 IPR000070 GO:0030599|GO:0042545
Lal16g0906 610 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Lal16g0906 610 PANTHER PECTINESTERASE 2 486 - -
Lal16g0906 610 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Lal16g0906 610 Gene3D - 210 499 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0906 Lal-Chr16 5967954 5971258 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0906 24 486 Carbohydrate Esterase AT5G51490 47.951 8.80e-158 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0906 K01051 - gmx:100806133 579.711