LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0906	ATGGGGAAAATATTCCTTAAACTCTTATTGTTATCTTTGGTTCTCCCAATAGCCTCGCCAAGAAGACCAACTTTCTCCAACAACAACATAGATTTGTGGTGCAACCAAACCCCACACCCGGAATCTTGCAAGCACTACATAAGTCTAACCAACAACTATCACCAAATCAAACAAAAATCCTTGTTTCGGGTAATACTTGTTCATTTGGCCTTAAAGCATGTTCTTATCATGCAAAGTGAAGCACAAGAAATTGCACAAAGCTTGATGAGCAAGAATCATAAAGCTTTACATAACGATTGTTTGGAGTTATATGAGAACACAATTTTCCATCTCAACCGCACCATTGAGTGCATGGATGGGAAGAGAAGTTGTTCACCGGTTGATGTACAAACTTGGCTCAGCACTGCTCATACAAACATCCAAACTTGTCCAACAGCGGCTGCAGAACTCAACGCTATAGATTTCAAGGTGTCAAAATTGAACAACAATATTACTGAGATGATAAGTAACAGCTTAGCTATCAACACGGATTTCCTGAAACAAAATAAAAATAATCACCGGTTATCAAAAGGAGGAAGAAATGTGTTTCCAAGTTGGCTTTCTAGTGATGATATGAATCTATTGATCTCAAATTCATCCATAAAGGCAGATCTTGTGGTTGCAGAAGATGGTTCGGGACATTTCAAGAATATCCAAGATGCTATCAATAAAGCAGCCGAGAGAGAATCAAAGACAAGATTTGTTATATATGTGAAGAAAGGCACTTACGAAGAGAATATTAAAGTGGATGTGAACAATGAAAACATCATGATGATTGGTGATGGAACGAAACAAACCATAATAACTGCTATAGATGGATCCCATTTTATTGCACGTGACATTACATTCCAAAACACGGCGGGTCCTCTCAAGGAGCAAGCGGTGGCGCTCCGATCAGCTTCCGACTTTTCTGTCTTCTATGGTTGTTCCATAGCAGGTCACCAAGACACGCTCTACGTTCAAGCTCAGCGTCAATTTTTTACAGAATGCAAGATATATGGCACTATAGACTTCATATTTGGTGATGCTGCAGTTGTGTTCCAAAATTGTCTGATTTATGTAAGAAAGCCTTTACATGGCCAATCAAACATGATTACAGCACAAGGCAGAGACAATGAACATAAAAACTCAGGAATTTCAATCCAGGATTGCCAAATTAAGGCTGCACCAGATCTCAAGCCCGTTGGTGACGAAGTCGCAACCTTCTTGGGAAGGCCATGGAAACCATATGCAAGAGTAGCTGTCATGAACACTTTCTTAGACACCTTGGTGGACCCACAGGGTTGGTCTTCATGGGAAAACACTGATCATGGTCTGAATACATTATATTTTGGAGAATATAATAATTATGGGCCAGGTTCATCCACAAGCAGTAGAATAAAATGGCCTACTTTTCATGTGATAGGAAGCCTCTCTGAGAGATTTGGAGGAAAATCTCTCTCTAGATATATCAAGTCTTCCATCTTGCATGTAACTAGAGACAACTGGTCCTTTGCTTTGAGCAATTCAGTTTGGTTGATTGGCAATGGTTCCAATGTGAACTTATGGAGAAACAATTGGTTAGACATCTCTTTGGTCCAATCAATGAACATCCCTGAAGTGCTTCACAAGTCTCTATTAGCATCAATAGCTGATTTTTGGCAAGACTACACATGGAGAATTCCCTCTAATTTGGCTAATATTTATCCAGACATCATTACCAGAGTCTCTGCCATAACTGCTTCAAATCAGAATGATAGATTGGTGTGGCAAGGATCTTCAGATGGGGCACTCTCTCAAATTGGCTTATTCTAA	1833	0.3972	MGKIFLKLLLLSLVLPIASPRRPTFSNNNIDLWCNQTPHPESCKHYISLTNNYHQIKQKSLFRVILVHLALKHVLIMQSEAQEIAQSLMSKNHKALHNDCLELYENTIFHLNRTIECMDGKRSCSPVDVQTWLSTAHTNIQTCPTAAAELNAIDFKVSKLNNNITEMISNSLAINTDFLKQNKNNHRLSKGGRNVFPSWLSSDDMNLLISNSSIKADLVVAEDGSGHFKNIQDAINKAAERESKTRFVIYVKKGTYEENIKVDVNNENIMMIGDGTKQTIITAIDGSHFIARDITFQNTAGPLKEQAVALRSASDFSVFYGCSIAGHQDTLYVQAQRQFFTECKIYGTIDFIFGDAAVVFQNCLIYVRKPLHGQSNMITAQGRDNEHKNSGISIQDCQIKAAPDLKPVGDEVATFLGRPWKPYARVAVMNTFLDTLVDPQGWSSWENTDHGLNTLYFGEYNNYGPGSSTSSRIKWPTFHVIGSLSERFGGKSLSRYIKSSILHVTRDNWSFALSNSVWLIGNGSNVNLWRNNWLDISLVQSMNIPEVLHKSLLASIADFWQDYTWRIPSNLANIYPDIITRVSAITASNQNDRLVWQGSSDGALSQIGLF	610

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0906	610	PANTHER	PECTINESTERASE	2	486	-	-
	Lal16g0906	610	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	28	178	IPR035513	-
	Lal16g0906	610	SMART	PMEI_2	25	174	IPR006501	GO:0004857
	Lal16g0906	610	ProSitePatterns	Pectinesterase signature 2.	345	354	IPR033131	-
	Lal16g0906	610	Pfam	Plant invertase/pectin methylesterase inhibitor	29	174	IPR006501	GO:0004857
	Lal16g0906	610	CDD	PMEI-like_3	32	180	-	-
	Lal16g0906	610	SUPERFAMILY	Pectin lyase-like	214	486	IPR011050	-
	Lal16g0906	610	Pfam	Pectinesterase	217	484	IPR000070	GO:0030599\|GO:0042545
	Lal16g0906	610	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	8	176	IPR006501	GO:0004857
	Lal16g0906	610	PANTHER	PECTINESTERASE	2	486	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0906	Lal-Chr16	5967954	5971258	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g0906	24	486	Carbohydrate Esterase	AT5G51490	47.951	8.80e-158	461

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0906	K01051		-	gmx:100806133	579.711

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