Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0895 ATGAACATAGAAGAAGAAGAAGCTATCCTTATAGACAATGAAGTTCAACCAACCACTTCTTTCTCACACACCATTATTTCCTCCACCACTTCTTCATCTTCCTCAACAGAAGGAAACAACAAGAAGAAGAAGAAGGTGGTGAATAGTAGTAGCAAGCATCCAACTTATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTGTCAGAAATTAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGCACTTTTCCCAAAGCAGATATGGCGGCTCGAGCTCATGACGTGGCGGCTCTTGCGATCAAGGGCAGCTCAGCTTACCTTAATTTCCCCGAGCTGGTCGGCGCGCTGCCCCGGCCAGCTAGTAAGTCCCCTAAGGACATACAAGCCGCAGCAACAAAAGCAGCCATGATAAATTATCACTGCAACCGGAGTCCGGAAGTAGAATTAGAAATCGAGACTGAGTTGAACCAAGTTAAGTCATCATCTTATCAAATGAATTTATCTTCGAATGATGAAGATGACATGTTTTTAAACCTTCCTGATCTCTCGCTCGACCTAAATTATTTCCATGTTGATGAGTTTCATTACTCATCAACTTGGCTTGTAACCGGAGCCGAATATCTTGACTCCGGTGTCCAAGAGCCTTTTCTATGA 660 0.4379 MNIEEEEAILIDNEVQPTTSFSHTIISSTTSSSSSTEGNNKKKKKVVNSSSKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPKADMAARAHDVAALAIKGSSAYLNFPELVGALPRPASKSPKDIQAAATKAAMINYHCNRSPEVELEIETELNQVKSSSYQMNLSSNDEDDMFLNLPDLSLDLNYFHVDEFHYSSTWLVTGAEYLDSGVQEPFL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0895 219 MobiDBLite consensus disorder prediction 24 55 - -
Lal16g0895 219 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Lal16g0895 219 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 20 206 - -
Lal16g0895 219 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Lal16g0895 219 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Lal16g0895 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0895 Lal-Chr16 5876240 5876899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0895 43 219 AP2-EREBP Transcription Factor Family AT2G44940 48.325 4.66e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal16g0895 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0895 - - aip:107629817 237.269