Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0893 ATGACTCGACGATGTTCCCATTGCAGCCACAATGGTCACAACTCTCGTACATGCCCCAACCGAGGGGTGAAGCTTTTTGGGGTTCGATTAACTGATGGGTCGATTCGAAAGAGTGCTAGTATGGGTAATCTTTCTCACTATGCTGGTTCTTCTGTTTCTGGTGGACCCCTTCTTGGTTCTGCTGGTGAAACACCTGATCAACCTTCTGCTGCTGTTGCTGATGGTTATGCTTCTGAGGATTTTGTTCCTGGCTCCTCTTCTACTTCCCGTGAAAGAAAAAAGGGAGTTCCATGGACTGAGGAAGAACACAGAATGTTTTTACTTGGATTGCAGAAGCTGGGAAAAGGAGATTGGCGTGGAATCGCAAGGAACTATGTTAAATCTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGGCGTTCCAGCCTGTTCGATATTGTTGCAGATGAAGCAGCTGAAGCTCCTATGGTAGAGCAAGACTTCCTGTCTGTTAATCTGTTTGAAGCTGACACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTACCCTCGATGAAGAGTGTGAATCCATGGATTCCACTAACTCGAATGATGGCGAGCCTGCAGGACCTGCACCATTAAATCCTGATATTAACTCAGTATCTTCTTTTCCGGTGATTTACCCGGCATATTATTCTCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCAGGATACAGTCCAGCAGAGCCCGTGAAGAAGGAGGAAACGCATGAAGTACTTAAGCCGACTGCAGTACATTCTAAAAGCCCTCTAAATGTCGATGAACTTGTGGGCATGTCCAAACTGAGTTTAGGAGAGACTATTGGTGACTCTGGCCCCTCCACTTTGAAACAAAAACTACAGGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCCGGCGACAGCTAGTTCGAATATGAATGGCAATGTCATCCATGCAGTTTAA 1014 0.4635 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSSVSGGPLLGSAGETPDQPSAAVADGYASEDFVPGSSSTSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVKSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAAEAPMVEQDFLSVNLFEADTEGNNPLPAPPTLDEECESMDSTNSNDGEPAGPAPLNPDINSVSSFPVIYPAYYSPFFPFPLPYWSGYSPAEPVKKEETHEVLKPTAVHSKSPLNVDELVGMSKLSLGETIGDSGPSTLKQKLQEEGPSRQSAFHATPATASSNMNGNVIHAV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0893 337 PANTHER BNAC07G34310D PROTEIN 1 327 - -
Lal16g0893 337 SMART sant 94 144 IPR001005 -
Lal16g0893 337 Gene3D - 96 148 - -
Lal16g0893 337 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
Lal16g0893 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Lal16g0893 337 PANTHER TRANSCRIPTION FACTOR KUA1 1 327 - -
Lal16g0893 337 MobiDBLite consensus disorder prediction 186 222 - -
Lal16g0893 337 MobiDBLite consensus disorder prediction 294 337 - -
Lal16g0893 337 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Lal16g0893 337 ProSiteProfiles SANT domain profile. 98 146 IPR017884 -
Lal16g0893 337 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Lal16g0893 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 145 IPR006447 GO:0003677
Lal16g0893 337 MobiDBLite consensus disorder prediction 1 21 - -
Lal16g0893 337 CDD SANT 97 142 IPR001005 -
Lal16g0893 337 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0893 Lal-Chr16 5862778 5866144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal16g0893 Myb_DNA-binding 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0893 - - cam:101491712 541.962