Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0890 ATGGCTTCGTCTTCTCCTCCGAATGCATTTCATGTTCCAAAAAAGTACGATGTTTTTATCAGTTTCAGAGGAGAAGACACACGTGGCAACTTCGTAAGCCATCTATTATCTTCTCTAGAGCGTCAAAAACGGACACACGTATACATAGATTACATGCTCCAACTGGGAAGTGAAATCTCAGAAGAACTGTTTAAAGCAATTGAGGATGCTGAAATTTCCATAGTTGTATTCTCAGAAAACTATAGTTCATCAAGGTGGTGTTTGGATGAGTTAGTTAAAATAATGGAATGCAAGAGGGAGAAAGAGCATTATTATGTTATACCAGTCTTCTACCATGTTACTCCAACACAAGTGCGAAACCAGACAGAGAGTTATAAGATAGCATTCGAACAACATGCCGGAAAACCCGAAAACGGCACAGACAAGTTGAACAAATGGAGAGAAGCTTTGGTCCAAGCTGCCAATTTAGCTGGGAAGCATGTTTGCAAACAAAATGGGGATGAAGCAAAACTCCTTGAAGAGATTGTGGAAGATGTTTTGTGTAAATTGAGAAGTAGGTATCCACAAGGGGGATCAAACAATATTTTGGGTATCAATGAAAACCTTGTTCCTATTGAATCATCATTTAGAGATTTCCCAAGCATTGGAATTTGGGGCATGGGTGGCATGGGTAAAACAACCATTGCTAGATGGCTGTTTGACAAACACCATTCTGAATTTGATGGTTATTGCTTTTTGCCAAATACAAGGGAAAGCTCTGGAGATCATGATCAGTTACTACATGATTTAAGAGGTAAACTTGTTTCCAAGCTTCTAGATCAAGGGAGAAAAACCGAGGTAGATACCTATTTTATTGAGCGCGAACTCCTTCGTCGAAAAGTTATGATTGTGCTTGATGATGTTAGTACTTTAAAACAAGTAGAAACTCTTGTTGGAAAAGTAGAACAATATGGATCAGGTAGTAGAATCATCATAACAACCAGAGACAAGGATGTGCTGAAAAAAGGAGTGGATAAAATACATGAGGTTAAGGCATTGAACTCTCAAGACTGCTTTCAACTTTTCTGCTTGAAAGCCTTCAACCAAAACCATCCTAAGACGGGGTATGAAGATTTGTCAAAATTGGCAGTTGATTATGCCAAAAGCATGCCATTAGCTTTAGAGGTTTTAGGTTCCTTTCTTTACAATAAAACTGTAGAGGAATGGGAACGTGAGTTGAAAAAACTGAAATGTATTCCCGATGAAGCAATTCAAAGTGTGTTAAAACTGAGTTATGACGGATTAAATGATAACCAGAAGGAAATATTTCTAGAGATTGCTATCTTTTTGAGGGGACATAATAAAGAAAAAGTCATGAACCTATTAGTCAGCCATGGCCTCCATGCAGTTATTGGCCTAAGAACCCTTCAAGACAATGCCCTTATAACTATAAGGGAGGATGCGGTAGAAATGCATGATTTGATACAAGACATGGGGCATGAAATTGTTCGTCAAGAATCTAATGAACCTGGAAAACGAAGTCGAGTGTGGGATCCTGAGCAAATCTACGATGTCCTGACAGAAAAAAGTGGGACTAATGCAGTTAAAGGCATGCGTTTAGATGTATCTGCCATTAGAGATCTAGACTTCAAGGTTGACACATTCAGAAAAATGAGGAAAAGATGGATGAAGAGTCTGAAAAGTCTGAAGATTAAATGTCATGAAATTAGAATGTAG 1716 0.3834 MASSSPPNAFHVPKKYDVFISFRGEDTRGNFVSHLLSSLERQKRTHVYIDYMLQLGSEISEELFKAIEDAEISIVVFSENYSSSRWCLDELVKIMECKREKEHYYVIPVFYHVTPTQVRNQTESYKIAFEQHAGKPENGTDKLNKWREALVQAANLAGKHVCKQNGDEAKLLEEIVEDVLCKLRSRYPQGGSNNILGINENLVPIESSFRDFPSIGIWGMGGMGKTTIARWLFDKHHSEFDGYCFLPNTRESSGDHDQLLHDLRGKLVSKLLDQGRKTEVDTYFIERELLRRKVMIVLDDVSTLKQVETLVGKVEQYGSGSRIIITTRDKDVLKKGVDKIHEVKALNSQDCFQLFCLKAFNQNHPKTGYEDLSKLAVDYAKSMPLALEVLGSFLYNKTVEEWERELKKLKCIPDEAIQSVLKLSYDGLNDNQKEIFLEIAIFLRGHNKEKVMNLLVSHGLHAVIGLRTLQDNALITIREDAVEMHDLIQDMGHEIVRQESNEPGKRSRVWDPEQIYDVLTEKSGTNAVKGMRLDVSAIRDLDFKVDTFRKMRKRWMKSLKSLKIKCHEIRM 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0890 571 Pfam TIR domain 15 189 IPR000157 GO:0007165
Lal16g0890 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 437 IPR027417 -
Lal16g0890 571 Gene3D - 190 343 IPR027417 -
Lal16g0890 571 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 557 - -
Lal16g0890 571 SUPERFAMILY "Winged helix" DNA-binding domain 416 519 IPR036390 -
Lal16g0890 571 SMART till_3 15 156 IPR000157 GO:0007165
Lal16g0890 571 Gene3D - 345 429 IPR042197 -
Lal16g0890 571 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Lal16g0890 571 Pfam NB-ARC domain 214 415 IPR002182 GO:0043531
Lal16g0890 571 PRINTS Disease resistance protein signature 214 229 - -
Lal16g0890 571 PRINTS Disease resistance protein signature 288 302 - -
Lal16g0890 571 PRINTS Disease resistance protein signature 380 394 - -
Lal16g0890 571 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 158 IPR035897 -
Lal16g0890 571 Gene3D - 12 188 IPR035897 -
Lal16g0890 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 557 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0890 Lal-Chr16 5846724 5849496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0890 5 566 WRKY Transcription Factor Family AT4G12020 29.809 3.82e-57 206