Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0885 ATGGCCAATCCAGCTGAAGTTTCTGCTTTGAACCGGATCAAACTGCATCTTCTAGGTGAACTTTCTCCGCTTGCAATTTCAACTTCAAATCAAAACAAACCTTGGTTCGAATTTGAAGAACCAAACCCTAGTTTCTCTCGATCTGAATCCCAACCACAATCTTCTTCCACTTCTGACTCTTCTGCTTCTCTCAATCATTACTTCACTGAACCAGAATTCGAGTTCCCTCAATTTGAACTCGAAAGCAAAACCAACGTAATTGACCTCGAAATAGATACCCCGAAAATCCTAACTGAGGTGAAGAAACCACAATTGAGTCGGAAACCATCGCTGGTGATTTCCGTGCCGAAGAAAACCGAGTGGATCCGGTTCGAAAAACAGGAACCGGAACCGGTTCAGAAGGTTGAACCTGAGGAGAAAAAACATTACAGAGGAGTTCGACAAAGACCATGGGGAAAATTCGCCGCTGAGATCCGAGACCCGAATAAGCGCGGTTCTAGGGTTTGGCTCGGAACATTCGAAACCGCAATAGAAGCTGCAAAAGCTTACGATAGAGCTGCGTTTAGGCTTCGTGGCTCAAAAGCGATTCTCAATTTTCCACTTGATGTTTGTGCTTTGGCGGAGAACGGCTACGGTGAGAGGAAGCGCCGCCGTGAAGAGACGGAGGAGGAGGTTGAAGAAGTAAAGGCGGTGGTGGTGAAGAAAGAGAAAACGATGGAAACAGTAACAGAGGTGAAGGGTGTTAATGAGCCTCCGTTGACGCCGTCTATTTGGACTGGGTTTTGGGATAGTGATGTTAAGGGAGTATTTAACGTTCCGCCGTTGTCGCCGTTATCTCCCATTCCGGCGTTGGGTTATTCACAACTAATGATGTTCAAGTTCCTTCGTCGTAATTTGTTAAGTTCAGTTTAA 912 0.4583 MANPAEVSALNRIKLHLLGELSPLAISTSNQNKPWFEFEEPNPSFSRSESQPQSSSTSDSSASLNHYFTEPEFEFPQFELESKTNVIDLEIDTPKILTEVKKPQLSRKPSLVISVPKKTEWIRFEKQEPEPVQKVEPEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLDVCALAENGYGERKRRREETEEEVEEVKAVVVKKEKTMETVTEVKGVNEPPLTPSIWTGFWDSDVKGVFNVPPLSPLSPIPALGYSQLMMFKFLRRNLLSSV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0885 303 MobiDBLite consensus disorder prediction 32 63 - -
Lal16g0885 303 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 277 - -
Lal16g0885 303 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 277 - -
Lal16g0885 303 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Lal16g0885 303 Coils Coil 211 238 - -
Lal16g0885 303 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Lal16g0885 303 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Lal16g0885 303 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Lal16g0885 303 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Lal16g0885 303 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Lal16g0885 303 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Lal16g0885 303 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0885 Lal-Chr16 5823980 5825057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0885 1 291 AP2-EREBP Transcription Factor Family AT5G47230 45.768 2.37e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0885 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0885 K09286 - gmx:100800453 271.166